Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01358 ATGGAATTACGTCCAGACGAGCAGCAGAACCAGGCCTCTTTCTTTTTGCTGGACTCTCTGTACTGTGAGGAAGAAAAATGGGAAGAGGAGGAAACAGTAGAACGAAGTTTTCCGGTGGCCAGTAACGGGGTCTTCTGTAATCTTCTGTTTGAAGAAGGTCCAGCGTTTTGTGAAAATGAAGAGCTTTTATCTCTCTTCTCCAAAGAGGAAGAACAGCTAGACCGAACCCATGTCTGTCTGGAAAGTCTGAAGGCAGATCGCCTGCTCTCTGCAGCTCGCTCTGAGGCTGTACATTGGATTCTGATAGTGAATGCCCATTTCGGATTCACACCTCTCACTGCCATTTTAGCCACTAACTATCTGGAAAGGTTTCTCTCCAGCCTCCATTTTCAGCGAGACAAACCTTGGATGGTTCAGCTGGTGGCTGTCACTTGCCTCTCTTTGGCTGCAAAAGTAGAAGAGATCGTAGTTCCTCTTCTTCTAGACCTCCAAGTGGAAGGAACTAAGTTTGTGTTTGAGGCGAAAACGATTCAGAGAATGGAGCTTCTGGTGCTGTCGAGTCTTCAATGGCGGATGCATCCAGTTACCCCTCTTTCATTTCTTGACCATATCACCAGAAGGCTGGGTTTTAAGAACCACCATCACTGGGAGTTTATCAGACGCTGTGAGAGTCTCACTCTCTCTCTCACCTCAGACTCCAGATTCATCGGTTTTCTTCCATCTGTAATTGCCACTGCAACGATGATGAATGTCATCGAACAGCTCGAACCAAGCAACTCACTGCCATTACAGAACCAGCTACTGAATTTTCTTAACATAACCAGGGACAAGGTGGAAGAGTGTTTTAATCTTATAAAAGAGTTGAAGGTCTTCCCCATCAGTCATCTCAAGCGCAAGGAGAGAGCTCCAAGCAGCCCAAGCGGTGTCGTTGACGGTTTCTTGACCTCTGATAGTTCCAATGATTCGTGGGTATCAGTGTGTTCATCTTCTTCATCAGTCTATTCATCGCCAGAACCTCCATTGAAGAAGAGTAGAGCTCAAAACCAGCAAATGAGGGTGCCTTCTATACTCAACCGAGTCTTCGTCGACGTTGTTGCAAGCCCCCCTTAG 1110 46.67 MELRPDEQQNQASFFLLDSLYCEEEKWEEEETVERSFPVASNGVFCNLLFEEGPAFCENEELLSLFSKEEEQLDRTHVCLESLKADRLLSAARSEAVHWILIVNAHFGFTPLTAILATNYLERFLSSLHFQRDKPWMVQLVAVTCLSLAAKVEEIVVPLLLDLQVEGTKFVFEAKTIQRMELLVLSSLQWRMHPVTPLSFLDHITRRLGFKNHHHWEFIRRCESLTLSLTSDSRFIGFLPSVIATATMMNVIEQLEPSNSLPLQNQLLNFLNITRDKVEECFNLIKELKVFPISHLKRKERAPSSPSGVVDGFLTSDSSNDSWVSVCSSSSSVYSSPEPPLKKSRAQNQQMRVPSILNRVFVDVVASPP 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30070549 30071874 + Bma017906.1 Bma03g01358 80031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01358 369 Pfam Cyclin, C-terminal domain 195 289 IPR004367 -
Bma03g01358 369 Gene3D - 75 193 - -
Bma03g01358 369 PANTHER CYCLINS 43 345 IPR039361 -
Bma03g01358 369 CDD CYCLIN 93 185 IPR013763 -
Bma03g01358 369 SMART Cyclin_C_2 195 307 IPR004367 -
Bma03g01358 369 MobiDBLite consensus disorder prediction 328 350 - -
Bma03g01358 369 SMART cyclin_7 98 186 IPR013763 -
Bma03g01358 369 Pfam Cyclin, N-terminal domain 65 192 IPR006671 -
Bma03g01358 369 Gene3D - 65 283 - -
Bma03g01358 369 PANTHER CYCLIN D3.1 PROTEIN 43 345 - -
Bma03g01358 369 SUPERFAMILY Cyclin-like 57 193 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01358 Bma-Chr3:30070549 Bma11g00604 Bma-Chr11:9019130 1.67E-95 dispersed
Bma03g01357 Bma-Chr3:29764426 Bma03g01358 Bma-Chr3:30070549 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01358 K14505 - qsu:112038380 372.474