Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01362 ATGTTGGACCCGATCGGCCTTCGCCATTTCCTTCGCCGCCGTGGGGCAATCGGCGGAGTTAGCTCTGTTCTCTCAGCCTTCGTACACCAGACGTCGCATTTCTTCTCCACAGACAGCTCCGAAGAACCAAACCGGAGCGGAAAAAACGTTAAATGGTTTATGTTGCCTCCCTATACTGCCACCGTAAATGGAGCCATGCTCGGAAAAGATATAGCCCACTGCCGCTCAAGAACGAAAGGTGATGCTGCAGTCACTACAACGACTGCATTGAAGTGGGTCCTACAGTGCTGCCCGGAGGTCCCGAGAAGCCTCGTGCAAAAGCTCTTTCGCCTCAGAAAGGTACGGAGAGAGTCTTTCATGGAGGAAGATTCAGAAAATGGCGATGGATTACAACACCGGCGACTTAAAAGGGTAGCAGCCAAGGACACTGTCAAATTTGGTGATCTCATCGTTCTGCCTAGTACAGTTAAAATGTCCTTATCACCCACTGAGAAAGAGCAGAATAGTTGCAGTGAAGAAGAAATAAAGTTTATGCATAGTCTTATGTTGTACAAGGATCCAGCCATTGTCGTAATCAATAAACCTCCAGGCATGCCCGTTCAGGGTGGCATTAGCATCAAAAGAAGTTTAGATGAAATAGCTGCAAGTAGTTTGAATTTTGACTTTTCAGAACCTCCTCGTCTAGTACATAGACTTGATAGGGACTGTAGTGGCGTTCTGTTAATGGGGAGAACACAAACTAGTGCATCAGTTCTCCACTCTATCTTCCGGGAAAAAACTTTGGGAGCATTGAAACATGAAAATGACAGGGAGAAGAGGACTTTTCAAAAACAGTATTGGGCGCTTGTAATTGGATCTCCAAGACGTTTAAATGGATTAATTTCAGCCCCTTTGGGAAAGGTGGTCATGGACAATGGACGATTCGAACGAACAATGATCATTGAAAAGGACCAAGCTGTGTCTTCTCACCATGCAATAACTGCTTACCGAGTCATAAAATCATTTAATGGTTATTCATGGTTGGAATTGACTCCTCTCACTGGGAGAAAACATCAGCTTCGTGTACACTGTGCCGAGGTATTAGGGACACCTATTGTTGGAGACTATAAATATGGATGGCAAGCTCATAGAAACTGGAAACCCTTATTTGGGTCTACTCTGGAAAGGAATTTTGATGTTCCTGAAGAAGAGATCATCCCATTTGGCCTCAATTGTCACAACGGAAGCATCGCCGAAAAGAAACCTCGGTTGCATCTTCACTGTAAGCAAATAACTTTACCTAATATTTCTCTAGCTTTACAAAAAGATCCATTCCCTTTAGATTATGACCTTTCAAACTTGGAAAGTCTTGAGTTGAATGCGCCTTTGCCTTTGTACATGCAAAGAAGTTGGGATATGACGAGTCCTTGA 1410 44.18 MLDPIGLRHFLRRRGAIGGVSSVLSAFVHQTSHFFSTDSSEEPNRSGKNVKWFMLPPYTATVNGAMLGKDIAHCRSRTKGDAAVTTTTALKWVLQCCPEVPRSLVQKLFRLRKVRRESFMEEDSENGDGLQHRRLKRVAAKDTVKFGDLIVLPSTVKMSLSPTEKEQNSCSEEEIKFMHSLMLYKDPAIVVINKPPGMPVQGGISIKRSLDEIAASSLNFDFSEPPRLVHRLDRDCSGVLLMGRTQTSASVLHSIFREKTLGALKHENDREKRTFQKQYWALVIGSPRRLNGLISAPLGKVVMDNGRFERTMIIEKDQAVSSHHAITAYRVIKSFNGYSWLELTPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRNWKPLFGSTLERNFDVPEEEIIPFGLNCHNGSIAEKKPRLHLHCKQITLPNISLALQKDPFPLDYDLSNLESLELNAPLPLYMQRSWDMTSP 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30838984 30842280 + Bma017910.1 Bma03g01362 80035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01362 469 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 48 467 - -
Bma03g01362 469 Pfam RNA pseudouridylate synthase 189 358 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Bma03g01362 469 Gene3D Pseudouridine synthase 173 434 - -
Bma03g01362 469 SUPERFAMILY Pseudouridine synthase 174 464 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Bma03g01362 469 CDD PseudoU_synth_RluA_like 189 426 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Bma03g01362 469 PANTHER RNA PSEUDOURIDINE SYNTHASE 3, MITOCHONDRIAL 48 467 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01362 - - - pvy:116119232 545.814
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01362 Bma-Chr3:30838984 Bma08g00366 Bma-Chr8:7760765 8.93E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g630 . . . . . . . . Cmo19g00594 . . . . . . . Cpe15g00466 . . . . . . . Cla02g00636 Cam02g0669 Cec02g0677 Cco02g0699 Clacu02g0677 Cmu02g0671 Cre02g0992 . . . . Lsi03g00533 . . . . . . . . . Bma03g01362 . . . . . Cma19g00579 . Car19g00439 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012254 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g01362 Bma_Chr03 FPKM 1.166161 1.216747 0.0 0.307867 0.0 0.0 0.0 5.143247 5.836592 6.144256