Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01373 ATGAGTTTGGGTTCGTCTCCCTCTGGTAATTTTTCTGGGGAAAAATCCCAGAGAAGTCATAACTATTCAGCCTCTTCCAATCCATCTAATAGTTATAGTAACAAGAGGACAAAGAGCAACCAGAAGACCCTTGGTGTTGCATGGGGAGCGAACTCTCCATCATCCTCTCGCTCTTCCAATCGAAAGAGCCCCTTTTCTGATTTTGGAAGTTATATGGTGGAGAAGAATAAGAAACTTCATAACCAATTCAATGCTGAAGCTTCAAATTCATCACATAACGGTGCAAGTCCTGGAAAGGCAATCTTTGACGACATTTGTATTTTTGTTGATGGTTTCACAATTCCTTCAAGTCAGGAATTGCGAAAGTACATGTTGAAGTATGGTGGAAACTTTAAGAATTATTTTTCAAGACATCAAGTCACCCATATAATTTGCAGTAATCTTCCTGACAGTAAAATAAAGAACATAAGGTCTTTCAGTTGTGGATTGCCCGTGGTGAATCCCGCTTGGATTTTGGATTCAGTCGCTGCAAAAAAACTTTTGAGTTGGGTTCCTTATGTACTCGACCAGCTTGCTAATAATCAACCAAGGTTATCAGCTTTCTTTTCTGCAAAAAACATCCCAATGTTGAGGAATTCTTCAACATGCAGAAATATTCAAGAAATAAATGAAACCGAGGTTTCCCCATTCAAGATTGTCACAGAAAGTGATGAACATATCTGTAAAGGGGGAGAATCTAAAGAACGTAGGGATAAAATTCCTGAAGAATTAAATATTACTTTTCAGGAGAACACTACAGTAACAGTTGTTGAGGAACCTCTATGCAACTTTGACAGTGAAGTTGTAAGAGGCGGTGATGAGTCCAGTCATTGTGGACCCTCTTTGTTTGCTAGCGGCCACAACTTCCTTGATCCTTGTGGTAGAAAATCACCGAATGGAACAATAGTTGAGCAGCTTGAACCGCATCACTCAACTTTAGAGGATCCGAATTTTGTGGAAAATTATTTCAAGAGTTCAAGGTTGCATTTCATAGGAACTTGGAGGAATCGGTATCGTAAGCGGTTCCCAAACTTGCCTAGTAGAAAGTCCACAAGTGTCAATAATTTTGGTAAATTTGGGAAAACTGTCATCATCCATGTAGACATGGATTGCTTTTTTGTCTCAGTGGTTATCAGGAAAAATCCTGTATTAATGGATAAGCCAGTAGCTATATGCCATTCAGACAATCCAAAAGGAACTGCTGAAATTTCATCTGCAAACTACCCAGCACGAGTTTATGGAGTTAAGGCAGGAATGTTTGTTAGACATGCCAAGGCTCTTTGTCCCCAACTTGCTATTCTTCCCTACAACTTTAAAGCCTATGAGGAGGTTGCTGATGAGTTCTATAATATTTTGCATAAGCACAGCAATATTGTTCAGGCTGTAAGCTGTGATGAAGCATTTTTAGATGTTAGCGACCTAGAGGGGGTAGATCCTGAGCTTTTAGCTTCAACAATAAGAAAAGAAATCTTTGAGACCACAGGATGTACTGCCAGTGCTGGGATAGCTGGAAATATGCTAGTGGCCCGCCTTGCAACTAAAGAAGCCAAACCGAATGGGCAATGTCTCATTCCTCCCGAGAAGGTGGATCCTTATTTGGACCGACTTCCCATTAATGCTCTCCCTGGAATAGGGCGTGTGTTAGAGGAGAAATTGAAAGGTAAAAATATTTCGACTTGTGGTCAATTGCGAATGATTTCAAAGGACTTCCTTCAAAAGGATTTTGGAACAAAGACCGGAGAGATGTTGTGGAATTATAGTAGAGGAGTGGATAATCGGTTGGTTGGGGTAATTCAGGAAAGCAGATCTATAGGGGCTGAAGTGAATTGGGGTGTGAGGTTCAAGGATTTAAAAGATACTCAATATTTCCTCGCCAACCTCTGCAAGGAGGTTTCATTGCGGTTACAAGATTGTGGAATGAGGGGGCGAACTTTTACTCTCAAGATAAAAAAGAGAAGAGAAAATGCTGAGGAGCCCATAAAGTATATGGGTTGTGGAGACTGGAAAATCTGA 2052 40.5 MSLGSSPSGNFSGEKSQRSHNYSASSNPSNSYSNKRTKSNQKTLGVAWGANSPSSSRSSNRKSPFSDFGSYMVEKNKKLHNQFNAEASNSSHNGASPGKAIFDDICIFVDGFTIPSSQELRKYMLKYGGNFKNYFSRHQVTHIICSNLPDSKIKNIRSFSCGLPVVNPAWILDSVAAKKLLSWVPYVLDQLANNQPRLSAFFSAKNIPMLRNSSTCRNIQEINETEVSPFKIVTESDEHICKGGESKERRDKIPEELNITFQENTTVTVVEEPLCNFDSEVVRGGDESSHCGPSLFASGHNFLDPCGRKSPNGTIVEQLEPHHSTLEDPNFVENYFKSSRLHFIGTWRNRYRKRFPNLPSRKSTSVNNFGKFGKTVIIHVDMDCFFVSVVIRKNPVLMDKPVAICHSDNPKGTAEISSANYPARVYGVKAGMFVRHAKALCPQLAILPYNFKAYEEVADEFYNILHKHSNIVQAVSCDEAFLDVSDLEGVDPELLASTIRKEIFETTGCTASAGIAGNMLVARLATKEAKPNGQCLIPPEKVDPYLDRLPINALPGIGRVLEEKLKGKNISTCGQLRMISKDFLQKDFGTKTGEMLWNYSRGVDNRLVGVIQESRSIGAEVNWGVRFKDLKDTQYFLANLCKEVSLRLQDCGMRGRTFTLKIKKRRENAEEPIKYMGCGDWKI 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32304174 32319398 + Bma017933.2 Bma03g01373 80046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01373 683 MobiDBLite consensus disorder prediction 1 67 - -
Bma03g01373 683 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 613 664 IPR036775 GO:0003684|GO:0006281
Bma03g01373 683 SUPERFAMILY BRCT domain 52 190 IPR036420 -
Bma03g01373 683 Gene3D - 549 603 - -
Bma03g01373 683 Gene3D - 394 448 - -
Bma03g01373 683 Pfam impB/mucB/samB family 380 527 IPR001126 GO:0006281
Bma03g01373 683 CDD PolY_Rev1 331 680 - -
Bma03g01373 683 Pfam impB/mucB/samB family C-terminal domain 615 665 IPR017961 GO:0003684|GO:0006281
Bma03g01373 683 Gene3D - 377 538 IPR043128 -
Bma03g01373 683 Gene3D BRCT domain 92 188 IPR036420 -
Bma03g01373 683 CDD BRCT_Rev1 101 188 - -
Bma03g01373 683 ProSiteProfiles UmuC domain profile. 377 558 IPR001126 GO:0006281
Bma03g01373 683 Gene3D - 329 366 - -
Bma03g01373 683 Pfam BRCT domain, a BRCA1 C-terminus domain 99 186 IPR001357 -
Bma03g01373 683 SMART BRCT_7 99 178 IPR001357 -
Bma03g01373 683 PANTHER DNA REPAIR PROTEIN REV1 35 680 - -
Bma03g01373 683 SUPERFAMILY DNA/RNA polymerases 375 608 IPR043502 -
Bma03g01373 683 MobiDBLite consensus disorder prediction 1 66 - -
Bma03g01373 683 Gene3D - 613 683 IPR036775 GO:0003684|GO:0006281
Bma03g01373 683 ProSiteProfiles BRCT domain profile. 97 188 IPR001357 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01373 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-] - vvi:100247553 879.396
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01373 Bma-Chr3:32304174 Bma08g00015 Bma-Chr8:285381 6.94E-34 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g647 . . . . . . . . Cmo19g00586 . . . . . . . Cpe15g00458 . . . . . . . Cla02g00651 Cam02g0684 Cec02g0698 Cco02g0718 Clacu02g0692 Cmu02g0687 Cre02g1006 . Cone8ag1100 . . Lsi03g00548 Csa07g00711 . . . . . . . . Bma03g01373 . . . . . Cma19g00572 . Car19g00431 . . . . . . . . . . . . . . . . . . Chy01g00104 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010766 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g01373 Bma_Chr03 FPKM 46.887436 47.569702 42.636253 43.938133 48.480865 52.819973 48.518898 40.869015 36.556034 38.169426