Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01401 ATGGCTGAGGAAGCAATTCTCAGCTATCTGGAAAACAACTACGAAATATCAGATTCTGGACTCTTCGCTGAAGAATTTGGGTTCGATCACAATGACATTGTGAATGTAATCAAAAGCCTCCGCGGTTTCAGATATATTGATGCTGAGGATATTAAGAAGGAGACCTGGGTTCTGACTGATGAGGGCACAACTTATACTGCCTCTGGCTCCCCTGAAGTTCAGCTTTTCCTGGCTATACCACCAGAGGGCATTTCAAAAGAAGATTTGCAGAAAAAGTTAGGCCAATCTGTTTTCAGAATTGGTTGTGCCCAAGCCGCAAAGAACGAGTGGGTAAATATGGGAAAATTAGTAGCTAGAAAGGTTCAACATGTTGATGACAAGGTGAAAGATCTACTTTTGCATATAAAAGATGGACAAGTGACTCCTTCTAGTACAAAGGAACTGCCAGAAGATTATGTTGAGCGGGTGAGGCGTGTTCATGAGTCTGGCGGTTATGGATCAAGAGGTTATGGATATGATTGGAAAAGAGAGGAAGCAAACAAGAACCTTCTACGGACTCATACAACTGCTTCGACCTCTTATTTTGTGTGTTATGTTGCTCAGAAACCATTTATGCCAAAAAAATATTTCTCCATTGATCGGGTATTTAGAAATGAAGCTGTAGATCGAACTCATCTTGCAGAATTCCACCAAATAGAAGGACTGGTATGTGATCGAGGTCTTACTCTTGGAGACTTGATTGGAGTCTTGAATGACTTTTTTTCTCGTCTAGGCATGTCGAAGCTGCGTTTCAAGCCTGCTTATAATCCATATACCGAACCTAGCATGGAAATTTTCAGTTATCATGAAGGATTCAAGAAATGGGTCGAAGTTGGAAATTCTGGAATGTTCAGACCTGAAATGTTACTACCTATGGGACTTCCAGAAGATGTTCGCGTAATTGCATGGGGCCTATCCCTTGAAAGACCTACCATGATACTGTATGGGATTGACAACATTCGAGATCTATTTGGTCACAAGGTTGATCTTGGTCTGATCAAACGAAACCCTATTTGTCGCCTTGGAATCTAG 1071 41.46 MAEEAILSYLENNYEISDSGLFAEEFGFDHNDIVNVIKSLRGFRYIDAEDIKKETWVLTDEGTTYTASGSPEVQLFLAIPPEGISKEDLQKKLGQSVFRIGCAQAAKNEWVNMGKLVARKVQHVDDKVKDLLLHIKDGQVTPSSTKELPEDYVERVRRVHESGGYGSRGYGYDWKREEANKNLLRTHTTASTSYFVCYVAQKPFMPKKYFSIDRVFRNEAVDRTHLAEFHQIEGLVCDRGLTLGDLIGVLNDFFSRLGMSKLRFKPAYNPYTEPSMEIFSYHEGFKKWVEVGNSGMFRPEMLLPMGLPEDVRVIAWGLSLERPTMILYGIDNIRDLFGHKVDLGLIKRNPICRLGI 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 35611548 35623677 - Bma018000.1 Bma03g01401 80074

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01401 356 PANTHER PHENYLALANINE--TRNA LIGASE ALPHA SUBUNIT 145 355 - -
Bma03g01401 356 TIGRFAM pheS: phenylalanine--tRNA ligase, alpha subunit 155 349 IPR004529 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Bma03g01401 356 Gene3D Bira Bifunctional Protein; Domain 2 132 356 IPR045864 -
Bma03g01401 356 PANTHER PHENYLALANYL-TRNA SYNTHETASE 145 355 - -
Bma03g01401 356 SUPERFAMILY Class II aaRS and biotin synthetases 167 342 IPR045864 -
Bma03g01401 356 PANTHER PHENYLALANYL-TRNA SYNTHETASE 3 131 - -
Bma03g01401 356 CDD PheRS_alpha_core 181 342 - -
Bma03g01401 356 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 205 350 IPR006195 -
Bma03g01401 356 Pfam PheRS DNA binding domain 3 70 124 IPR040725 -
Bma03g01401 356 Pfam PheRS DNA binding domain 1 3 56 IPR040724 -
Bma03g01401 356 PANTHER PHENYLALANINE--TRNA LIGASE ALPHA SUBUNIT 3 131 - -
Bma03g01401 356 Pfam tRNA synthetases class II core domain (F) 177 342 IPR002319 GO:0000049|GO:0004812|GO:0005524|GO:0043039
Bma03g01401 356 Gene3D - 1 93 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01401 K01889 FARSA, pheS; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] - nnu:104587241 408.297
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01401 Bma-Chr3:35611548 Bma08g00482 Bma-Chr8:23134138 9.07E-77 dispersed
Bma03g01396 Bma-Chr3:35051588 Bma03g01401 Bma-Chr3:35611548 7.04E-88 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g543 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1128 Cone8ag1175 . . . Csa07g00820 . . Blo04g00500 . . Bda14g00534 . . Bma03g01401 . . . . . . . Car19g00488 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005750 2 1 1 3 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g01401 Bma_Chr03 FPKM 10.215173 10.787822 0.37633 0.606554 4.741434 5.776093 5.327834 3.147802 2.913235 2.584615