Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01542 ATGGCGTTTCTTCTCGGAAAGCTCTTGTCTGATTACGATGAAGACGAAGATTCACACGGCTGTTCTTCAGTCTGCGCCGATGACAGTTCTAAAGTTTGCCCCTCGTCGTGTTTCTCTGTCTGCCCCAGAATTTGTTACAATCAAAACCTCGCCACCTATTTAAACCCTCCCCCTTCATCCCATCAACCCTTCGCCAAATCCCATAAATTCACCCTCCTCTTGATTTCCCTTCTTCTGTCCGTCTTCATCGCCTGCCTTCTGGCCTTCCTCTCCGTTCTCTTCCGCAGATTCTACTTCCGCCGCTTCACTTCTCGGGCAAGATCTCCACCACGACCTCCGGACAGTTATGACGAGTTTATTGATGAAGAAGAGGGCCCCATTTTGGACCATCCGATCTGGTATATTCGCACTGTTGGCCTCCAGCCGTCGGTGATCAGCGCCATCACCATCTGCAAGTACAAGCGAGGCGATGGTCTGATCGAAGGTACTGACTGTTCTATATGTTTAACTGAGTTTGAGGAAGAAGAAAGTCTGAGGCTGCTACCCAAGTGCAGCCATGCTTTTCACCTCCCATGTATTGACACCTGGCTTCAATCCCACACCAGTTGCCCCTTATGCCGAGCCCCGGTCTTCACCGTAGCTCCATCACCGGAGCCTGGACCTGTTAGTTTCGGTCAAGCCAGGGTAATCCAGTTGGAAAATTCGCAGAACGGGGGTGATCTTAGTAATAGAGAAGAAGAAGGCGATGAAGAAGAGCAAGAAGAAGAAGAAGAAGGGGATGAGTTACCATTAGTTGAGGATAGAACAAAGAGATCAGTTGAGAATTCTAAGGGAGGCGGAGGAGGGGTGCAAATGGTAAGAAGATCAGTTTCTCTTGATTCTCGATCAGATTTTCAGATCAGTTGTGCTCTTCCCCGTGTTTATCAAGATCCAAAATCAGGGTCCGATCAGATTGAACTGCCAGAAGAAAAGGAATTGAATACATTAGACATCAGTTCGAAGAGGAGTGGGAAAAATGAAAACCTTCTAAGCCTAGTGTCAGCTTCTTCATCTGGGAAATCTGTACATAGAGAGACTGTGAAGAGATCACTTTCCTGTTCCATAAGTTCTTCCTAA 1116 47.49 MAFLLGKLLSDYDEDEDSHGCSSVCADDSSKVCPSSCFSVCPRICYNQNLATYLNPPPSSHQPFAKSHKFTLLLISLLLSVFIACLLAFLSVLFRRFYFRRFTSRARSPPRPPDSYDEFIDEEEGPILDHPIWYIRTVGLQPSVISAITICKYKRGDGLIEGTDCSICLTEFEEEESLRLLPKCSHAFHLPCIDTWLQSHTSCPLCRAPVFTVAPSPEPGPVSFGQARVIQLENSQNGGDLSNREEEGDEEEQEEEEEGDELPLVEDRTKRSVENSKGGGGGVQMVRRSVSLDSRSDFQISCALPRVYQDPKSGSDQIELPEEKELNTLDISSKRSGKNENLLSLVSASSSGKSVHRETVKRSLSCSISSS 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 51159583 51160698 - Bma018252.1 Bma03g01542 80215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01542 371 MobiDBLite consensus disorder prediction 233 286 - -
Bma03g01542 371 MobiDBLite consensus disorder prediction 244 262 - -
Bma03g01542 371 Pfam Ring finger domain 164 207 IPR001841 -
Bma03g01542 371 CDD RING-H2_PA-TM-RING 164 207 - -
Bma03g01542 371 SUPERFAMILY RING/U-box 159 217 - -
Bma03g01542 371 SMART ring_2 165 206 IPR001841 -
Bma03g01542 371 MobiDBLite consensus disorder prediction 332 354 - -
Bma03g01542 371 ProSiteProfiles Zinc finger RING-type profile. 165 207 IPR001841 -
Bma03g01542 371 MobiDBLite consensus disorder prediction 316 331 - -
Bma03g01542 371 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 24 368 IPR044675 -
Bma03g01542 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 213 IPR013083 -
Bma03g01542 371 PANTHER RING-H2 FINGER PROTEIN ATL54 24 368 - -
Bma03g01542 371 MobiDBLite consensus disorder prediction 305 371 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02598 Bma-Chr1:83620540 Bma03g01542 Bma-Chr3:51159583 6.65E-47 dispersed
Bma03g01542 Bma-Chr3:51159583 Bma14g00158 Bma-Chr14:2167625 1.81E-39 dispersed
Bma03g01542 Bma-Chr3:51159583 Bma13g00520 Bma-Chr13:10372910 3.74E-22 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01542 - - vvi:100257251 255.758