Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01547 ATGAGAGAACATGACAGGGCTACCATACATGAAGCAATGGAGCAGCAGACCATAAGCGTTGCTAAGGCTGGTCTTGTAACAACTCTCAGAACTAGGACGATAGTATTTGGTGCAACAAATCCTAAAGGGCACTATGATCCTGATCAACCTTTATCTGTCAATACAACCCTCTCTGGTCCCTTGCTGAGCAGATTTGATATAGTCCTTGTCCTCCTAGACACAAAGAATGCTGAATGGGATGCAGTTGTTTCTTCGCACATTCTGTCTGAGGGTGAAGTAGAACAAGGGAAGTTTGAAGATCTATCAAAATCTTGGTCTTTGCCTATGATTCGCAGGTATATTCACTTTGTGAAAGGGTACTTCAGACCTGTGCTGACAAAGGAAGCAGAAAATATCATCTCAAATTATTATCAGCTCCAAAGAAGATCGGCAACTCATAATGCAGCCAGGACAACCGTCCGAATGCTTGAAAGTTTGATCCGCTTAGCTCAAGGTCTGCCCTTTTTTGTTGAATTATGTTATCAGCCATATTTTTATCTTTGTGCTGATTTTGATACAAAAAATTTTGCAGCTCACGCCAGACTCATGTTTAGAAATGAAGTTACTCGGTTAGATGCCATTACGGCTATATTATGCGTTGAATCATCCATGACTACCTCAGCTATTGTGGACAGTGTCGGGAATGCACTCCACTCCAATTTTACAGAGAATCCAGATGTGGAATGTATCCTTTTCAGGTTTTGTTAG 747 41.37 MREHDRATIHEAMEQQTISVAKAGLVTTLRTRTIVFGATNPKGHYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNAEWDAVVSSHILSEGEVEQGKFEDLSKSWSLPMIRRYIHFVKGYFRPVLTKEAENIISNYYQLQRRSATHNAARTTVRMLESLIRLAQGLPFFVELCYQPYFYLCADFDTKNFAAHARLMFRNEVTRLDAITAILCVESSMTTSAIVDSVGNALHSNFTENPDVECILFRFC 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 51453499 51457620 - Bma018258.1 Bma03g01547 80220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01547 248 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 1 243 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bma03g01547 248 PANTHER DNA HELICASE MCM9 1 243 - -
Bma03g01547 248 Gene3D - 1 167 IPR027417 -
Bma03g01547 248 SMART mcm 1 218 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bma03g01547 248 ProSiteProfiles MCM family domain profile. 1 87 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma03g01547 248 Pfam MCM P-loop domain 1 89 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma03g01547 248 Pfam MCM AAA-lid domain 109 164 IPR041562 -
Bma03g01547 248 PRINTS Mini-chromosome maintenance (MCM) protein family signature 61 69 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma03g01547 248 PRINTS Mini-chromosome maintenance (MCM) protein family signature 11 24 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma03g01547 248 PRINTS Mini-chromosome maintenance (MCM) protein family signature 34 46 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma03g01547 248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 167 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01547 Bma-Chr3:51453499 Bma10g01097 Bma-Chr10:32664098 2.75E-154 dispersed
Bma03g01547 Bma-Chr3:51453499 Bma03g00566 Bma-Chr3:4689080 5.97E-18 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01547 K10738 - oeu:111379335 364.77