Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00007 ATGGATGAGTCGTCTATGCAACTCTTACAGGAGATCGGAGCGGGATTCCACCGCCGTTCTCGCCCTACCAAGGATTTCATTCTGAAATCCCTCAGACAAGTTGTAAATGCATTGGCAAAGCTAGAACAGCCCTCTGCTGTAGATGCAACTTATAAGCTGGAAGTAGCTGAAATATTAGAAAGTTCCATCAAAACTCTGAAGACATTCATAGTTCATCAACTGCTTCAGCATAACGATAAGGAAGTTAGACTGCTACTGGCTGTATGTGTCAGTGAAATATTTCGTGTCCAGGCACCAGAACTACCTTTTGAAGACAAATATTTGAGTGATGTTTTTAAACTTATTCTGAGCACGTTTGCTGACCTAGCTGATACCACAAGCCCTTTTTTTTCATGGAGGGCTAAAGTATTAGAGACTGTTCGACGATGTAAATGTTGTGTGATAATGCTTGATGTCGACTGCAATGATTTGGTTGTTGACATGTTTAGAACTTTTTTCTCTGCTGTGAGAGATTATCATCAACCGAATCTTCTTAATGATATGGTGTGTATAATGTCATATATTTTGTATGAGGAAGTTTCGCAACATCTCTTGGATGTGATTTTGGATAATCTTCTTAAAGAAAGGCAGGGTGAACCTGCTGCTGCTACCCTTCTTGCCGTTTCAGTAATTGAAAGATGTGGTGAAAGACTGGAGCCTTTTATTTGTGGGTTTCTAACATCTTGTATTTTAAACAGAGATTCCGTTGGAAGTGAGCTTAAAGAATATTATCATGAAATCATATTCAAAATTTTCCAATGTGCTCCACAGATGCTTCTTGCTGTTATCCCAAATTTGGTTCATGAGCTTCTAACTGATCAAGTTGATGCCAGAATTAAAGCTGTTAATATGATTGGCAAGCTGTTAACGGTGCCTGAGGGAAATGTTGCACAAAACTACCATGATCTTTTCGTGGAGTTCTTGAAAAGATTCTCTGATAAGTCTCCAGAAGTGAGAATCAGTTCCATACTGTGTGCTAAAGCTTGTTTTATGGCCAATCCTTCTGGGTTAGATTCACAAGAAGTCATTAAGGCACTTGAAGGACGATTTTTGGACTTTGACGATAAAGTGAGAACTCAAGCAGTGATTGTTGCTTGTGATATTGCAACGTCAAATGTGAAACTTGTTTCTCCATCGCTTATATCTCAGGTTATGGAAAGACTACGAGATAAGAAGGTTTTGGTTAGAAGAAAGGCCTTTCAGAAGTTGCTCGAAGTATATCGAGCCTATTGCAACCAATGTTCGGAAGGCTTCATGTCAATATGCAATGAGTTCGAACAAATTCCCTGTAAAATCTTGATGCTTTGCTATGATAAAGATTGCAAGGAATTCAGATCTCAAAATATGGAACTAATTTTGGCGGAGGACTTATTTCCCGTCCATCTTACCATTCAAGAGAGGACTGCACACTGGATCCATTTGTTTTCTCTTTTTTCCCCTTTTCATATAAAGGCACTAAGTTCTATTTTATCTCAAAAACGAAGGTTTCAAACTGAGATGCAAAGTTATCTGGACTTACGACTAAAACAGAAGGAGAATCATTCAGAAGACATGAAAGAGAGAATCAAAAGTATATTTGTCAAGATGTCAGCCTCCTTTCCCGATCCTATTAAAGCAGAGGGGTGCTTTCTTAAACTAAATCAATTGAAGGATGACAACATATTTGATACTCTGGCAATGTTACTGAACGAGATGACAATTGTTGGGGCCAGGGCCACAAAAGATAAGTTTATGAACTTGACAGGGGAAAGAAATCCAAATTTGGAGTTTTTAAAGGCACTATCTTCAAAGTGCTCATATAATATATTTGGTGCTGAGCACATCACTTCTATATTAAATCATATTTCCATTCACAGATTTAGGAATAAAAACTTGGAAGTTGAGTCTATCCAACTTCTACAAACTATTACTGGCACTTTCCCCTCACTTCTTAGGGGCTCTGAAGGACAATTTCTTACATTTTTGGAAGGGGGTACTCCAATTGATGATAACTTGATTGAAGTATTGGCAACTACATGTGCTTATACATCTATGAAACTCAGGGATGTTTACCCATTGTTGAAGAGGTTATGTCTAGAGGGAACACGTGCACAGGCCAAGTTTGCTATCTCTGCAATTGGGGCTTTAGTAAATGACCATGAGCAATTAATTTTCTCAAAATTATGCAAGGAGCTTGTCGATTCTCTGTGTAGAGGGAGGAACCTGCCCACAGTACTGCAATCTCTTGGCTGTATTGCACAATATTCAGTTCCAACATTTGAGTCTCATTATGGGGAGATCGCCTCATATATACGGACTACAATATTTAAAGTGAATTCATACGATGAAACTAATTCATTCGATGATCCGTCATTGTGTAGCAAGTCTTGCAAACTCAAGATTTTTGGGCTGAAAACTTTAGTCAAGAGTTATTTACCACACCAAGGAAGTCATGTCAGTAAAAAGATTGATGAGTTTCTAGACTATTTGTTAAAAATCCTAAATGGAGGAGAATTTTTTGTGGACAACTTCTCCTGTGAAAGTGACAAGAGTCATATCAGATTAGCTGCTGCAAAGTCTGTTCTTCTGTTATCAAGAAGATGGGATTTATACATTTCTCCACATATATTTTCCTCAACAATTTTTATGGCAAAGGAGTCTTCTTTTGTTAGAAGGTTATTTATCGATAAGACACACAAACTGTTGAAGAAGCATGTCATCCCTAATAGATATGCTTGTGCTTATGCACTGTCCATCTTGGATTGCCCGAAGAACTTGCAAAATGATTCAATCAAATATATGGCAGAGTTTATCAAAGATCACAGTAGGAAAGCACCGATCGACCAATCATCTGCGGTGCAAGGAGGATCATTCACTTCTTATCCTGCATATATAGTGGTGTATTTGATCTATCTTCTAGCTCATGACGTGGGGTTTCCTTCAATAGGTTGTCAAGATGAAGAATTATTTGCTAGGTTTTTCAGTCCGCTTTTCTTCGTACTGCAGATCTTGGTCAACAAAGGCACAGCGGGTGAAAAATTGGATGTTTTTACCGATTCTGCATTATATTTGTGTAGTATTTTTCGTGCCATTAAAATGGCTGAGGATGTGGTGGATTTCCAAAAAACTTCTAACCTACACATTCTAGCAGACGTTGGTTTGTCCTTTGTAACTGCCTTGAGTTCTTATGTTTCCTCCTCTCGTGCCCTTGGGCAGATTTTACTACCATCATCATTGTATAAAGTAAGATTTTCCAAATTTCTGCTCACCCTCTTATAG 3297 38.25 MDESSMQLLQEIGAGFHRRSRPTKDFILKSLRQVVNALAKLEQPSAVDATYKLEVAEILESSIKTLKTFIVHQLLQHNDKEVRLLLAVCVSEIFRVQAPELPFEDKYLSDVFKLILSTFADLADTTSPFFSWRAKVLETVRRCKCCVIMLDVDCNDLVVDMFRTFFSAVRDYHQPNLLNDMVCIMSYILYEEVSQHLLDVILDNLLKERQGEPAAATLLAVSVIERCGERLEPFICGFLTSCILNRDSVGSELKEYYHEIIFKIFQCAPQMLLAVIPNLVHELLTDQVDARIKAVNMIGKLLTVPEGNVAQNYHDLFVEFLKRFSDKSPEVRISSILCAKACFMANPSGLDSQEVIKALEGRFLDFDDKVRTQAVIVACDIATSNVKLVSPSLISQVMERLRDKKVLVRRKAFQKLLEVYRAYCNQCSEGFMSICNEFEQIPCKILMLCYDKDCKEFRSQNMELILAEDLFPVHLTIQERTAHWIHLFSLFSPFHIKALSSILSQKRRFQTEMQSYLDLRLKQKENHSEDMKERIKSIFVKMSASFPDPIKAEGCFLKLNQLKDDNIFDTLAMLLNEMTIVGARATKDKFMNLTGERNPNLEFLKALSSKCSYNIFGAEHITSILNHISIHRFRNKNLEVESIQLLQTITGTFPSLLRGSEGQFLTFLEGGTPIDDNLIEVLATTCAYTSMKLRDVYPLLKRLCLEGTRAQAKFAISAIGALVNDHEQLIFSKLCKELVDSLCRGRNLPTVLQSLGCIAQYSVPTFESHYGEIASYIRTTIFKVNSYDETNSFDDPSLCSKSCKLKIFGLKTLVKSYLPHQGSHVSKKIDEFLDYLLKILNGGEFFVDNFSCESDKSHIRLAAAKSVLLLSRRWDLYISPHIFSSTIFMAKESSFVRRLFIDKTHKLLKKHVIPNRYACAYALSILDCPKNLQNDSIKYMAEFIKDHSRKAPIDQSSAVQGGSFTSYPAYIVVYLIYLLAHDVGFPSIGCQDEELFARFFSPLFFVLQILVNKGTAGEKLDVFTDSALYLCSIFRAIKMAEDVVDFQKTSNLHILADVGLSFVTALSSYVSSSRALGQILLPSSLYKVRFSKFLLTLL 1098
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 142139 153199 + Bma018457.1 Bma04g00007 80376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00007 1098 Pfam Sister chromatid cohesion protein PDS5 protein 25 1087 - -
Bma04g00007 1098 PANTHER PRECOCIOUS DISSOCIATION OF SISTERS 5, ISOFORM A 6 1088 - -
Bma04g00007 1098 Gene3D - 4 444 IPR011989 -
Bma04g00007 1098 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 6 1088 IPR039776 GO:0007064
Bma04g00007 1098 SUPERFAMILY ARM repeat 58 882 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00007 K11267 PDS5; sister chromatid cohesion protein PDS5 - qsu:112007155 1343.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00007 Bma-Chr4:142139 Bma14g00915 Bma-Chr14:10305159 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g272 . . . Bda03g00009 . . Bma04g00007 . . . Cma01g01401 . . . . . . . . . . . . . . . . . . . . Cone4ag1405 . . . . . . . . . . . . . . . . Cmo01g01451 . . . . . . Cpe02g00541 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006492 1 5 1 1 0 0 1 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00007 Bma_Chr04 FPKM 14.612613 15.887526 18.362183 16.782732 19.379757 17.214338 18.742239 22.104681 21.357637 23.145851