Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00010 ATGGCTCCACTCCATCCAAACGCCACCCTCTGGCCCATCCATAATATAAAGGACTTCCAGTCGCTGCTTCTATTTGTGTCTACTTTGATGACGAGTGAAGGCCATTCCAACTGCTATTTCCATCCCAAACAATTGGTCGTCGGTGTTTGTGCTTTCTGCTTGAACGACCGTCTCTTGATCTTGGCTTCAAAACAACCTCACTTTATTCAACCTCCCAAGCCTAATGCTACTCTCTCCAACATCCTCCGTTTCCTCACCGGCCGCCTTCAGTTCCGGCAACCGAACCCGGAAAACTCCGATCACCAAGCTTCCCCCTGCCATGAAGAGTGGTTCATAACGATAAAGTTGGAACGAAATGGGGTAGGGTCGTGGGAGAAGAGCAAAGATTCAAAGGTTTCGGTGGAGACTTCATGGAATCACGATACTCAGAGGAAGGAGGGATCGGAGACGGAGACCAGGGGAGTGATAGTGCATGGGAAACCGCATGCGTCGCTGAGGTGGCGGAAGCGGATTGGTCACTTGTTCCAACTCATGAGATGGTGGAAGAAGAGGCCAAACAAGAGTGGTACAGGTCGAAGGAGTGAAGGGGAGGAAAGGATGGATAAGGAGCCTGACAAAGAAGAGGATGGCAATGCCAATTACAAAGGCAGGAAGGAGGAGAGAAAGTGA 669 50.37 MAPLHPNATLWPIHNIKDFQSLLLFVSTLMTSEGHSNCYFHPKQLVVGVCAFCLNDRLLILASKQPHFIQPPKPNATLSNILRFLTGRLQFRQPNPENSDHQASPCHEEWFITIKLERNGVGSWEKSKDSKVSVETSWNHDTQRKEGSETETRGVIVHGKPHASLRWRKRIGHLFQLMRWWKKRPNKSGTGRRSEGEERMDKEPDKEEDGNANYKGRKEERK 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 183248 184354 + Bma018460.1 Bma04g00010 80379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00010 222 MobiDBLite consensus disorder prediction 188 222 - -
Bma04g00010 222 MobiDBLite consensus disorder prediction 185 222 - -
Bma04g00010 222 MobiDBLite consensus disorder prediction 125 153 - -
Bma04g00010 222 PANTHER OS04G0690500 PROTEIN 33 187 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00010 - - - qsu:112007153 156.762
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00820 Bma04g00010 CCT
Bma01g02068 Bma04g00010 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00820 Bma-Chr1:7743008 Bma04g00010 Bma-Chr4:183248 3.05E-40 transposed
Bma01g02068 Bma-Chr1:76151812 Bma04g00010 Bma-Chr4:183248 5.50E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g269 Blo01g01294 . . Bda03g00011 Bpe02g00645 . Bma04g00010 Bma01g02068 Cmo04g02469 Cmo15g00694 . . . . Sed03g0789 . . Bhi04g01918 Tan11g1283 Cmetu03g1887 . Hepe02g2275 . . Cla08g00586 Cam08g1001 Cec08g0590 Cco08g0700 Clacu08g0710 . Cre08g0521 . . . . . . . Cme03g00566 Blo17g00177 . . Bda13g01481 Bpe02g01640 Bpe14g00383 Bma01g00820 . . . . . . Car04g02286 Car15g00627 Cpe01g02048 . . . . . . . . . . . . . . . . . Chy03g00806 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004342 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 0 1 1 1 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00010 Bma_Chr04 FPKM 0.0 0.144765 0.0 0.0 0.136041 0.0 0.490326 0.338604 0.0 0.229343