Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00013 ATGGCCGACGAATGTGTCTTCGATGCCCACGCCGCTTCCGCCTTGCTCAACGACCTCCGACTCACCTTCGCTTCCGGCAAGACCAAGACTTATCCATGGAGAATATCCCAGTTGAAATCTCTCCTCAAACTCTGCGAGGACCGCGAGCAGGATATCGCCGATGCTCTTCGCTCCGACCTTTCCAAGCCCGATGTCGAATCTCTCGTAGCTATGCTGAAGAATTCATGTAGAAATGCGCTGGCCCAACTCAAGCACTGGGTCATACCTGAAAAGGCTAAAACATCAATTACCACATTTCCTTCTTCAGCTGAAATCGTATCAGAGCCTCTTGGTGTTGTCCTGATTATATCAGCCTGGAATTATCCTTTCTTGTTGTCACTTGATCCATTAATTGGAGCTATTGCTGCGGGTAATGCTGTGGTTTTGAAGCCATCAGAAGTTTCGCCTGCAGCGTCATCTTTACTTGCAAAACTATTAGGTGAATATCTGGATAACTCTTCTATAAAGGTCGTGCAAGGAGCTGTTTCTGAAGCTTCAGCTTTGTTGGAACAGAAGTGGGACAAAATATGCTATACAGGCAATGGTAGAGTGGGACGCATCATAATGACTGCTGCTGCGAAGCATCTTACACCAGTACTTTTGGAGCTGGGAGGAAAATCGCCTGTTGTTGTTGATTCAGGCATTAGTTTAAAGGTCGCAACTAGACGAATAATTGCCGGTAAGTGGGGATGTAATAATGGACAAGCATGTATCTCCCCAGACTACATCATAACTACAAAAGATTATGCTCCTAAGTTGATAGAATCTCTGAAGCAAGAATTAGAAACGTTCTACGGGAAGAATCCGTTGGAATCAAAGGACTTATCCCGGATTGTAAACATCAATCACTTTACTCGCTTATCAAAGATCATGGATGAAGAGAAAGTTTCGGACAAGATTATCTTTGGAGGTGAAAGAGACAAATCCAACTTAAGGATTGCTCCTACCATCTTGCTGGACGTCCCTCGAGACTCTTTGATCATGACTGAGGAAATTTTTGGTCCGTTGCTTCCCATTCTTACGGTTGACAAAGTGGAAGACAGTTTGGATATAATAAACTCTGGTCCAAAGCCACTTGCGGCGTACATATTCACAAACAACAAGAAGCTCAAGGAGCAATTTGTGTCATCTGTCTCAGCGGGAGGTTTGGTTGTCAACGACACAACTATACATCTTGCAGTTCACAGCCTACCATTTGGAGGAGTGGGAGATAGTGGAATAGGTGCATACCATGGGAAATTTTCTTTCGATGCTTTTAGCCATAAGAAAGCAGTCATCTATCGAGGATTCGCTGGTGATGCTTCGATGAGGTACCCGCCATTCACTTCTGGAAAGTTGAGAATTCTCAAGGCTCTTGTCGGTGGTAGTTTATGGGGCGTTATCCGTGCTCTTTTCGGGTGGTCTTGA 1446 44.81 MADECVFDAHAASALLNDLRLTFASGKTKTYPWRISQLKSLLKLCEDREQDIADALRSDLSKPDVESLVAMLKNSCRNALAQLKHWVIPEKAKTSITTFPSSAEIVSEPLGVVLIISAWNYPFLLSLDPLIGAIAAGNAVVLKPSEVSPAASSLLAKLLGEYLDNSSIKVVQGAVSEASALLEQKWDKICYTGNGRVGRIIMTAAAKHLTPVLLELGGKSPVVVDSGISLKVATRRIIAGKWGCNNGQACISPDYIITTKDYAPKLIESLKQELETFYGKNPLESKDLSRIVNINHFTRLSKIMDEEKVSDKIIFGGERDKSNLRIAPTILLDVPRDSLIMTEEIFGPLLPILTVDKVEDSLDIINSGPKPLAAYIFTNNKKLKEQFVSSVSAGGLVVNDTTIHLAVHSLPFGGVGDSGIGAYHGKFSFDAFSHKKAVIYRGFAGDASMRYPPFTSGKLRILKALVGGSLWGVIRALFGWS 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 200808 204572 + Bma018462.1 Bma04g00013 80382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00013 481 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 214 221 IPR029510 GO:0016491
Bma04g00013 481 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 218 418 IPR016163 GO:0016620
Bma04g00013 481 PANTHER ALDEHYDE DEHYDROGENASE 4 481 - -
Bma04g00013 481 PIRSF ALDH 3 475 IPR012394 GO:0006081
Bma04g00013 481 Pfam Aldehyde dehydrogenase family 30 438 IPR015590 GO:0016491
Bma04g00013 481 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 436 IPR016162 GO:0016491
Bma04g00013 481 PANTHER ALDEHYDE DEHYDROGENASE 4 481 IPR012394 GO:0006081
Bma04g00013 481 SUPERFAMILY ALDH-like 17 443 IPR016161 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00013 Bma-Chr4:200808 Bma06g00107 Bma-Chr6:1523269 3.88E-152 dispersed
Bma04g00013 Bma-Chr4:200808 Bma11g00290 Bma-Chr11:2726018 2.28E-148 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00013 K00128 - twl:120017045 761.525