Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00016 ATGGCGCCCTTGTTGCAATCCTCTCAGCCATGGGTGGAAAAATATCGACCTAGGCAAGTCAAAGATGTGGCGCACCAGGACGAGGTGGTCCGTGTTCTTACCAACACCCTCCAAACTACCAATTGCCCGCACATGCTCTTTTATGGTCCTCCTGGTACCGGAAAAACCACCACCGCTCTTGCAATTTCCCATCAGCTTTTCGGACCAGAACTTTACAAGTCTAGAGTGTTGGAACTGAATGCAAGTGATGATCGTGGGATAAACGTCGTTCGAACTAAAATCAAAAACTTTGCTGCAGTCGCTGTAGGTTCTACCCAGAATCAAGGGGGTTACCCTTGTCCGCCGTACAAGATAATTATCCTTGATGAGGCAGATTCAATGACTGAAGATGCTCAGAATGCCTTGCGGCGAACGATGGAAACTTACTCTAAAGTTACAAGATTCTTTTTCATTTGTAATTACATCAGTAGGATAATAGAGCCGCTGGCCTCCAGGTGTGCAAAATTTAGGTTTAAGCCACTTACAGAAGCAATCATGAGCAATCGTGTATTACACATTTGCAAAGAAGAAGGTCTAAATCTGGATGAAGAGGCACTTTCAACCTTAAGTTCTATCTCACAAGGTGATCTTCGGAGGGCTATTACATTTTTGCAGTCAGCAGCACGCTTATTTGGATCATCGATCTCTTCCCAAAATCTTATCAATGTGTCTGGGGTTCTCCCACAAGAGGTTGTTGGGGCTCTTTTTACAGCCTGTAAAAGTGGCAACTTTGATTCAGCGAACAAAGAAGTCAATAATGCAATTGCAGATGGTTACCCAGCATCTCAGATGTTTTCTCAGCTATTTGAGATGGTTGTTGAAGCAGATGATATTCAAGATGAGCAGAAGGCTAAAATATGCAAGAAATTGGCAGAAGCAGATAAGTGTCTGGTTGATGGCGCAGATGAGTATTTGCAACTGCTGGACGTGGCAAGTACTGTGATGCAAACGCTCTCAGATATGCAACAGTAA 1011 43.92 MAPLLQSSQPWVEKYRPRQVKDVAHQDEVVRVLTNTLQTTNCPHMLFYGPPGTGKTTTALAISHQLFGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSTQNQGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEAIMSNRVLHICKEEGLNLDEEALSTLSSISQGDLRRAITFLQSAARLFGSSISSQNLINVSGVLPQEVVGALFTACKSGNFDSANKEVNNAIADGYPASQMFSQLFEMVVEADDIQDEQKAKICKKLAEADKCLVDGADEYLQLLDVASTVMQTLSDMQQ 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 217900 221398 - Bma031077 Bma04g00016 80385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00016 336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 229 IPR027417 -
Bma04g00016 336 SMART AAA_5 41 174 IPR003593 -
Bma04g00016 336 Pfam ATPase family associated with various cellular activities (AAA) 45 172 IPR003959 GO:0005524|GO:0016887
Bma04g00016 336 PANTHER REPLICATION FACTOR C SUBUNIT 4 7 330 - -
Bma04g00016 336 CDD HLD_clamp_RFC 174 233 - -
Bma04g00016 336 Gene3D - 240 330 - -
Bma04g00016 336 SUPERFAMILY post-AAA+ oligomerization domain-like 241 329 IPR008921 GO:0003677|GO:0006260
Bma04g00016 336 Pfam Replication factor C C-terminal domain 241 324 IPR013748 -
Bma04g00016 336 Gene3D - 176 239 - -
Bma04g00016 336 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 7 330 - -
Bma04g00016 336 CDD AAA 26 166 - -
Bma04g00016 336 Gene3D - 3 173 IPR027417 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02668 Bma04g00016 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02668 Bma-Chr1:84176956 Bma04g00016 Bma-Chr4:217900 1.55E-35 dispersed
Bma04g00016 Bma-Chr4:217900 Bma05g00808 Bma-Chr5:45416612 1.33E-64 dispersed
Bma04g00016 Bma-Chr4:217900 Bma02g00213 Bma-Chr2:2279343 3.29E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00016 K10755 - zju:107405386 596.275