Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00018 AAGTCTTCTCTTTGGATGTCGGAGTTGCAGATGGAGTTGCCGGAGTGCCCGGTTTGCCTGCAAAACTACGACGCCCACCCTGCTGAGACCCATCATTTCCTTCCTCAGTTATGGTCTGACGAGTTTTACAAGAGCTGGAAGGATTGGGTCCTCCCCCATCACGCCATTTCATTCGACCCAGAAATTGAAGACCGAGGAGACGAAAAAGTGGCGATGGGAAGAATTGGGTCCGTTTTGGGTTCAGAGTACTCGTTGCCAGTTTGGGTGTCTGACAATCGAAGGGCGAGTCTTGCGCGGGTTGTCTCTTTTCCTCCCGTGGATATTCATTCAGTAATTAAATTCGGCTATGTTGCTACTATTATGAAATGTTTAAGTGGCATGAAGGACGGGGAGAGAAACGAACTGGGTTTGATGCTGAGAGCGGGTGTTAAGAGTTGTGGAAAAGTGTGTAAAGCTTTGGGATTGTGGGGTAATTTGGAAGAGGGGTTTTTGTATCTCGTGTGTGAGAGACAAAAGGGGAACTTGATAGAAAAGGTTCGCAGTCCGGAAAATGGATTTTGTGGAAGAGATGGGGTTGAATTGACTGAAAACGGGCTGCGTGCGTTTGCAATGATTGCTGTTGATATGTGTGAAGCTCTGCTAGCTTTGCGCTCTCTTGGGTTGAGTTTAGGCTTTTTGTGTTCTTCTTGTTTTGTTGTTGATCATTTTGGTCGCATTTGTATTGATTTAAATGAGGCTTTTGTGATGGGAAAGACAATTCGCAGGACTGTTATAGAGGCTTTTTTTGACAATACAACGAAAATTGATGAAAAATATTTGGGAGTCATTTTTAGTGATTTCATTTCTCAAGAGATCTTTATCAGCCCAGAGGTCTTGGTCGATTTGTTGGAGAAAGAGGGCATGGTTGTAGAATGTGGCAGCAAAATGAGGTCAAACTGGCCAAGCTGCGATGTTTGGTCATTGGCTTGTGTTTTGCTGAGGCTTTTGATTGGAAGCAGTTGCTTTGAAAAGTTTCAAGGAATTGGGGAAGAAAATTGTTTTGATTTTTCTTCATTGTATATAAACTGGATGAACAAAGCTAGTTCACTTTTAGAAACGAAGCTAGGTTCGGAAGGCATGTCACTGCTGGAGATCCTCTGCGCAAGTATCAATTTTGATCCGGAAAGTCGTCCATGTCTAACTTACATGTGGAAATGCTTAAGAGAATTGATTATTCTACCAGAACTGGATATTTTGGATGGTACGGAAGGAGCATTTAATGATGTTGTCATCGACCTTCGTTTGGTTCTCGGAGAACTTGTGCAGCCATCTCAGGATTTTCGGAATAAAAAACACAGAGAGTTTGAGCAAGCAGAAGTCAGCAGTGGAGGGGATTCCGAGCAAGTTGGCAAAGATGTTATTGAAAGTCTGTCAGATGGAATGGTTAAATGTAAAGATCTGCTTGGTCACCATGATTCTGTCTCTGGATTGGTTATTGGAGGCAATTTTCTGTTTAGCTCCTCGTATGATAAAACCATCCTTGTGTGGTCTTTGCAGGACTTTTCTCATGTACACACGTTTAAAGGTCACGAGCACAGAGTAGTGGGTGTGGTTTATGTGGATGGAGAGCGACCATTATGCGTAAGTGCTGATAATGGAGGTGGCATTTTTATGTGGAGCATTAGTATGCCTCTTGAGCAAGGAGCATTGAAGAAATGGTACGATGAGAAGGATTGGCGTTATAGTGGCATCCATGCATTGGCTTGTGCAGAAAATGGATATATTTATACAGGCGGAGGAGATAAATCTGTAAAAGCTTGGTTGTTGAAGGATCAGACCTTGTCTTGCACTATGAGTGGGCATAAGTCTGCAGTTTCTGCCCTTGCCGTATGCGAAGGGGTTCTATACAGTGGTAGCTGGGACGGGACTATCCGATTATGGAGTCTTGCAGATCACAGTGCATTAACAGTTTTGGGGGAAGACTCGTGTGGACCCCTGGCGTCTGTGTTGTCGCTCGCTGTTGATAGGAGCATTCTTATGTGGCGGAACGATGCATTTGTGAAAAGTGTGAAATCACACGAAGGAGCCATATTTTGTGCAGGGGTGTGGGGAAAGTGGGTCGTCACTGGAGGGTGGGATAAGAGCATTAATGTGCAGGAGTTTTCAGGCGAGATGGAGATGATAAAAATAGGATGCATCCCTGGTGTGTCTGTTGCATCGGCGTTGTTGTATTGGGAAGGAAGGCTTTTTGTTGGATATGCTGATAGATTCATAAAGGATAATCTGGGTCGTCTGAAAAGGTCCTGGGGTGACTTGACGAGATTGAATTTCTGGATCGTTCGTGATTACTACCGTCTTGTGAATGCCGTGAATGACTTTGAGCCGGAGATTCAAAATCTGACGGATGGGCAGCTCACTTCTAAGACGGAGGAGTTCCGCAGAAGACTACGACAGGGTGAAACTCTGGCTGACATTCAAGCTGAGGCTTTTGCTGTTGTTCGTGAAGCTGCAAAGAGGAGACTTGGCATGCGCCATTTTGACGTGCAGATTATTGGAGGAGCAGTACTCCATGATGGATCCATTGCTGAGATGAAAACGGGTGAAGGAAAAACACTGGTTTCCACTCTTGCTGCATATCTTAACGCCTTAACTGGTGAAGGTGTTCATGTGGTAACTGTTAATGATTATCTAGCTCAACGGGATGCTGAATGGATGGGTCGCGTCCACCGCTTTTTAGGTCTTTCTGTGGGTCTTATACAGAGGGGGATGAAAGCTGAAGAACGAAGATCTAACTATAGATGTGACATAACATATACCAACAATTCTGAACTTGGTTTTGATTATCTTCGAGATAACCTTGCTGGAAACAGTGTACAACTTGTGATGAGATGGCCAAAGCCATTTCATTTTGCCATAGTTGATGAAGTTGATTCTGTACTTATTGATGAAGGGAGAAATCCTTTATTAATAAGTGGCGAGGCCAGTAAAGATGCTGCTCGATATCCAGTTGCTGCAAAAGTAGCTGAGCTGTTAGTGCAGGGTCTTCATTACAAAGTGGAGCTTAAAGATAACTCGGTTGAGTTAACGGAAGAGGGAATAACAATAGCAGAGATTGCCCTTGAAACAAGTGACTTATGGGATGAAAATGATCCATGGGCTAGATTTGTGATGAATGCGTTAAAGGCTAAAGAATTCTACCGCCGAGATGTTCAATACATTGTCAGGAATGGGAAGGCTCTTATAATAAATGAGCTAACGGGTAGAGTTGAGGAGAAAAGGAGATGGTCTGAGGGAATTCACCAGGCTGTAGAGGCCAAAGAAGGTTTGAAGATTGAGGCAGATTCGGTGGTTGTGGCACAAATCACATATCAATCATTATTCAAGCTTTATCCAAGGTTGTCAGGGATGACCGGAACTGCAAAAACTGAGGAGAAAGAGTTTCTGAAGATGTTTCAGGTGCCTGTCATTGAAGTGCCCACAAATCTCCCAAATATTCGCAAAGATTGGCCTATTCAGGCTTTTGCTACTGCTCGTGGAAAATGGGATCATGTTCGTCAAGAAGTTGAGTACATGTTCAGACAGGGACGTCCTGTTTTAGTAGGTAGCACTAGGTGTTTTTTTTTTTTGGTGCAAAGGGAGAGTTCTAACACCATCATGATGTTTGGTAAGAGTGAACGCCTTTTTAGCTTTGCCTACATAGTATTAGTCTCATTTAGATTTCAGATATTGCATGTTGAGAATTCTGAATACTTGTCTGATCTGCTGAAGGAACGAAAAATTCCCCACAATGTCTTAAACGCAAGACCAAAGTATGCTGCAAGGGAAGCTGAAACTGTTGCTCAAGCTGGAAGAAAGAAAGCCATTACTATTTCAACAAATATGGCTGGCAGAGGCACTGACATCATTCTAGGAGGAAATCCGAAAATGCTTGCAAAAGAAATCATAGAAGATAGCTTGCTTCCATTTTTGACAAAAGAAGTTCCCGATCATGAAGTTGACGGTGAAGATGTTTCACAGAAGGTGATTATCATTGTCTATGTTACTCTGAGAAGTTTTATTCTGATCAACATTATGCTGCAGGTACTATCCAAGGTAAAGGTCGGACCTTCATCATTGGCCTTGCTAGCAAAGACAAATATTATGGTTAAATATGTCAGCAAAAATGAAGGAAAAGCCTGGACCTACAAGGAGGCAAAATCTATAATTTCAGAGTCTGTAGAATTGAGTCAATCAATAAGTTTGGAAGAGTTAGAGAGGCTTGTTGGCCAACAGGCGGAGACATACCCTCTTGGCCCCACTATTGCACTTGCTTATCTGTCTGTTTTGAAGGATTGTGAAAGCCACTGTTTGAGGGAAGGTGCAGAAGTGAAAAGGCTTGGAGGTCTTCATGTCATTGGGACGTCTTTGCACGAGTCCCGAAGAATAGATAACCAGCTTCGTGGGAGAGCTGGAAGACAAGGAGATCCTGGTTCTACTCGATTTATGATCAGCTTACAAGATGAGATGTTTCAAAAGTTCAATTTTGATACCGAGTGGGCTGTGAGACTCATTTCAAAAATTACTAATGATGAAGATATACCTATTGAAGGCGATACCATTGTAAAACAGCTATTGGCCCTGCAAATCAATGCAGAAAAATATTTCTTTGGCATAAGAAAGAGCCTAGTTGAATTCGATGAAGTATTAGAGGTGCAGAGGAAACATGTATATGATCTTCGGCAGTCAATTTTGACTGGGAATAATGAAAGCTGTTCCCAGCATATATTCCAGTACATGCAGGCGGTGGTAGATGAAATAGTATTCAAATATGTACATCCAACGAAGCATCCCAGAAGCTGGGATCTGAGTAAACTACTGAAGGAGTTCTTGACAATTGGAGGGAAACTATTGGATGGTGTATCCACTGAAATCACCGAGGAAGCTTTACTGAATGCACTTGCGAGATCACATCAAATGAAATTCACAGATATCAACAATGTTCTCCTTCCTGGTTTACCTCCACCTCCTAATGCCTTTAGAGGGATACGCAGGAAAAACTCTTCTTTAAAACGTTGGCTTGTCATCTGTTCTGATGACTTAATTCAAATTGGAATGTACAGAACAACTGCTAATGTTCTCCGCAAGTACCTTGGAGATTTACTCATTGCTTCATATTTGGATGTTATTCAAGGAAGCGGTTTCGATGATTTATATGTTAAAGAAGTGGAGGTCAGATCCTTTCTTCTAACCTTATCCCATTTTGAATTTCGGATGCAGAGAGCTGTCCTTGTGAAGACTTTAGATTGTTTCTGGAGGGATCATCTCATCAACATGAACAGACTTAGCTCGGCGGTAAATGTTAGAGGCTTTGGGCACAGAAATCCTCTCGAGGAATACAAGATTGATGGATGCAAATTCTTCATATCCATGCTTAGCGCGACCAGGAGACTAACTGTGGAATCTCTCTTGCGCTATTGGTCATCCCCAATGGAGTCTCAAGAAATATTCATAGCATAA 5475 42.63 KSSLWMSELQMELPECPVCLQNYDAHPAETHHFLPQLWSDEFYKSWKDWVLPHHAISFDPEIEDRGDEKVAMGRIGSVLGSEYSLPVWVSDNRRASLARVVSFPPVDIHSVIKFGYVATIMKCLSGMKDGERNELGLMLRAGVKSCGKVCKALGLWGNLEEGFLYLVCERQKGNLIEKVRSPENGFCGRDGVELTENGLRAFAMIAVDMCEALLALRSLGLSLGFLCSSCFVVDHFGRICIDLNEAFVMGKTIRRTVIEAFFDNTTKIDEKYLGVIFSDFISQEIFISPEVLVDLLEKEGMVVECGSKMRSNWPSCDVWSLACVLLRLLIGSSCFEKFQGIGEENCFDFSSLYINWMNKASSLLETKLGSEGMSLLEILCASINFDPESRPCLTYMWKCLRELIILPELDILDGTEGAFNDVVIDLRLVLGELVQPSQDFRNKKHREFEQAEVSSGGDSEQVGKDVIESLSDGMVKCKDLLGHHDSVSGLVIGGNFLFSSSYDKTILVWSLQDFSHVHTFKGHEHRVVGVVYVDGERPLCVSADNGGGIFMWSISMPLEQGALKKWYDEKDWRYSGIHALACAENGYIYTGGGDKSVKAWLLKDQTLSCTMSGHKSAVSALAVCEGVLYSGSWDGTIRLWSLADHSALTVLGEDSCGPLASVLSLAVDRSILMWRNDAFVKSVKSHEGAIFCAGVWGKWVVTGGWDKSINVQEFSGEMEMIKIGCIPGVSVASALLYWEGRLFVGYADRFIKDNLGRLKRSWGDLTRLNFWIVRDYYRLVNAVNDFEPEIQNLTDGQLTSKTEEFRRRLRQGETLADIQAEAFAVVREAAKRRLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMGRVHRFLGLSVGLIQRGMKAEERRSNYRCDITYTNNSELGFDYLRDNLAGNSVQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKVAELLVQGLHYKVELKDNSVELTEEGITIAEIALETSDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIEADSVVVAQITYQSLFKLYPRLSGMTGTAKTEEKEFLKMFQVPVIEVPTNLPNIRKDWPIQAFATARGKWDHVRQEVEYMFRQGRPVLVGSTRCFFFLVQRESSNTIMMFGKSERLFSFAYIVLVSFRFQILHVENSEYLSDLLKERKIPHNVLNARPKYAAREAETVAQAGRKKAITISTNMAGRGTDIILGGNPKMLAKEIIEDSLLPFLTKEVPDHEVDGEDVSQKVIIIVYVTLRSFILINIMLQVLSKVKVGPSSLALLAKTNIMVKYVSKNEGKAWTYKEAKSIISESVELSQSISLEELERLVGQQAETYPLGPTIALAYLSVLKDCESHCLREGAEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMISLQDEMFQKFNFDTEWAVRLISKITNDEDIPIEGDTIVKQLLALQINAEKYFFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGNNESCSQHIFQYMQAVVDEIVFKYVHPTKHPRSWDLSKLLKEFLTIGGKLLDGVSTEITEEALLNALARSHQMKFTDINNVLLPGLPPPPNAFRGIRRKNSSLKRWLVICSDDLIQIGMYRTTANVLRKYLGDLLIASYLDVIQGSGFDDLYVKEVEVRSFLLTLSHFEFRMQRAVLVKTLDCFWRDHLINMNRLSSAVNVRGFGHRNPLEEYKIDGCKFFISMLSATRRLTVESLLRYWSSPMESQEIFIA 1824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 226013 239366 + Bma018466.3 Bma04g00018 80387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00018 1824 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 758 1822 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bma04g00018 1824 ProSiteProfiles SecA family profile. 758 1522 IPR014018 -
Bma04g00018 1824 Pfam SecA preprotein cross-linking domain 993 1097 IPR011130 GO:0016020|GO:0017038
Bma04g00018 1824 SMART SecA_DEAD_2 765 1141 IPR011115 GO:0005524|GO:0016020|GO:0017038
Bma04g00018 1824 Gene3D - 1156 1522 IPR027417 -
Bma04g00018 1824 Gene3D - 777 1154 IPR027417 -
Bma04g00018 1824 SUPERFAMILY Helical scaffold and wing domains of SecA 1525 1821 IPR036266 -
Bma04g00018 1824 Pfam SecA Wing and Scaffold domain 1520 1811 IPR011116 GO:0016020|GO:0017038
Bma04g00018 1824 ProSiteProfiles Trp-Asp (WD) repeats profile. 480 519 IPR001680 GO:0005515
Bma04g00018 1824 SMART WD40_4 676 713 IPR001680 GO:0005515
Bma04g00018 1824 SMART WD40_4 604 641 IPR001680 GO:0005515
Bma04g00018 1824 SMART WD40_4 513 553 IPR001680 GO:0005515
Bma04g00018 1824 SMART WD40_4 559 601 IPR001680 GO:0005515
Bma04g00018 1824 SMART WD40_4 473 510 IPR001680 GO:0005515
Bma04g00018 1824 SUPERFAMILY Protein kinase-like (PK-like) 159 404 IPR011009 -
Bma04g00018 1824 Gene3D Helical scaffold and wing domains of SecA 1721 1814 - -
Bma04g00018 1824 SUPERFAMILY WD40 repeat-like 477 751 IPR036322 GO:0005515
Bma04g00018 1824 Gene3D Helical scaffold and wing domains of SecA 1525 1651 - -
Bma04g00018 1824 Gene3D - 987 1107 - -
Bma04g00018 1824 Pfam SecA DEAD-like domain 773 1140 IPR011115 GO:0005524|GO:0016020|GO:0017038
Bma04g00018 1824 Gene3D - 560 720 IPR015943 GO:0005515
Bma04g00018 1824 SUPERFAMILY Pre-protein crosslinking domain of SecA 985 1106 IPR036670 GO:0016020|GO:0017038
Bma04g00018 1824 Gene3D Transferase(Phosphotransferase) domain 1 197 402 - -
Bma04g00018 1824 CDD DEXDc_SecA 797 1153 - -
Bma04g00018 1824 Gene3D - 452 559 IPR015943 GO:0005515
Bma04g00018 1824 PRINTS SecA protein signature 818 842 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bma04g00018 1824 PRINTS SecA protein signature 1078 1100 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bma04g00018 1824 PRINTS SecA protein signature 872 882 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bma04g00018 1824 PRINTS SecA protein signature 856 870 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bma04g00018 1824 PRINTS SecA protein signature 925 945 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bma04g00018 1824 PRINTS SecA protein signature 1152 1165 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bma04g00018 1824 PRINTS SecA protein signature 1115 1132 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bma04g00018 1824 Hamap Protein translocase subunit SecA [secA]. 757 1814 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bma04g00018 1824 ProSitePatterns SecA family signature. 1281 1296 IPR020937 GO:0006605|GO:0006886|GO:0016020
Bma04g00018 1824 ProSiteProfiles Trp-Asp (WD) repeats profile. 611 650 IPR001680 GO:0005515
Bma04g00018 1824 Pfam WD domain, G-beta repeat 609 641 IPR001680 GO:0005515
Bma04g00018 1824 PANTHER PROTEIN TRANSLOCASE SUBUNIT SECA2, CHLOROPLASTIC 758 1822 - -
Bma04g00018 1824 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 611 642 - -
Bma04g00018 1824 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1156 1503 IPR027417 -
Bma04g00018 1824 ProSiteProfiles Protein kinase domain profile. 64 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g00018 1824 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 766 1154 IPR027417 -
Bma04g00018 1824 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 844 1007 IPR014001 -
Bma04g00018 1824 SMART SecA_PP_bind_2 986 1097 IPR011130 GO:0016020|GO:0017038
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00018 K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] - gmx:100793437 2198.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01118 Bma-Chr2:52899699 Bma04g00018 Bma-Chr4:226013 2.63E-57 dispersed
Bma04g00018 Bma-Chr4:226013 Bma14g01832 Bma-Chr14:39231395 3.30E-07 dispersed
Bma04g00018 Bma-Chr4:226013 Bma04g00193 Bma-Chr4:1718721 2.76E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g220 . Blo12g01120 . Bda03g00019 . . Bma04g00018 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0426 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004074 1 2 1 1 1 2 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 2 1 1 8 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00018 Bma_Chr04 FPKM 31.169127 35.833897 32.683506 31.313469 31.451424 32.291973 34.640869 46.475311 52.158508 51.945644