Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00023 ATGGTTGATGCGGAAACCCTGAAAGCTGATGATCTGAACTCTTCCTTCGAGAAGCTTTTAACTTGTTTCCGTGGGGGCGAAGTAAGCATGTCGAGAGGGGTAATTACTGAATGGCAAGATATTCCTTTGGAGATTTTGTTGCAAATCATGTCGTTGGTTGATGGTCAGACGGTGATCATTGCATCTGGAGTGTGTCGTGGGTGGAGGGATGCTATCTGCTCTGGCCTAACCCATCTCTCCCTATCCTGGTGTACCAAGAACATGAACAGCTTGGTTCTCTCGGTAGTTCCGAAATTTAGTAAACTGCAAACTCTAGTGCTGCGCCAGGACAAGCCACAGCTTCAAGATGATGGTGTGGAGGCGATCGCCAGTTTCTGTCATGATCTTCGAGTACTTGACCTCAGCAAAAGCTTCAAGCTTACGGATCACTCCCTCTATACCTTGGCTCACTCCTGTCACAATCTTATCAAACTCAACATTAGTGGGTGCTCATCTTTCTCAGATGTGTCTCTCTCGTATCTGGCTCATTTTTGCCGAAAACTCAAGGCTTTAAATCTGTGTGGATGTGTTCAAGCCACAAATGATTGTGCATTGCTGGCTATAGGGAGATATTGCAATCAGTTGCAGTCGCTAAATCTCGGATGGTGCGAAAATGTAAGTGACATCGGCGTGATGAGTTTGGCTCTCGGATGTCCTGATCTTCGAACACTAGACCTATGCGGCTGTGTACGAATAACAGATGACAGTGTAGTTGCTTTGGCAAAAGGGTGCCCTCGCCTCCAGGCTCTCGGCCTGTACTATTGCCAGAAGATAACAGACAAGGCGATGTACTCTCTGGTGCAGAGCCGAGGGGAGAAGAAGGAGGAGGTGGCGGAAGAGGGGCTAAAAGCTCTAAACATCAGCCAATGTACGGCTCTCACTCCCCCTGCCGTTCAGGCCGTGTGTGATTCGTTTCCCGCTCTCCACACTTGCTCCGGAAGGCATTCGCTCATCATGAGCGGTTGCTTGAACTTGACCTCAGTTCATTGCGCTTGCGCCATCCATCCTCACCGCCCCATATGA 1062 49.15 MVDAETLKADDLNSSFEKLLTCFRGGEVSMSRGVITEWQDIPLEILLQIMSLVDGQTVIIASGVCRGWRDAICSGLTHLSLSWCTKNMNSLVLSVVPKFSKLQTLVLRQDKPQLQDDGVEAIASFCHDLRVLDLSKSFKLTDHSLYTLAHSCHNLIKLNISGCSSFSDVSLSYLAHFCRKLKALNLCGCVQATNDCALLAIGRYCNQLQSLNLGWCENVSDIGVMSLALGCPDLRTLDLCGCVRITDDSVVALAKGCPRLQALGLYYCQKITDKAMYSLVQSRGEKKEEVAEEGLKALNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLTSVHCACAIHPHRPI 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 304387 305858 + Bma018474.1 Bma04g00023 80392

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00023 353 SUPERFAMILY RNI-like 72 322 - -
Bma04g00023 353 Pfam Leucine Rich repeat 231 254 IPR001611 GO:0005515
Bma04g00023 353 Pfam Leucine Rich repeat 205 228 IPR001611 GO:0005515
Bma04g00023 353 SMART fbox_2 41 80 IPR001810 GO:0005515
Bma04g00023 353 SMART LRR_CC_2 99 125 IPR006553 -
Bma04g00023 353 SMART LRR_CC_2 73 98 IPR006553 -
Bma04g00023 353 SMART LRR_CC_2 292 317 IPR006553 -
Bma04g00023 353 SMART LRR_CC_2 231 256 IPR006553 -
Bma04g00023 353 SMART LRR_CC_2 257 282 IPR006553 -
Bma04g00023 353 SMART LRR_CC_2 126 151 IPR006553 -
Bma04g00023 353 SMART LRR_CC_2 205 230 IPR006553 -
Bma04g00023 353 SMART LRR_CC_2 152 177 IPR006553 -
Bma04g00023 353 SMART LRR_CC_2 178 204 IPR006553 -
Bma04g00023 353 Pfam F-box domain 38 74 IPR001810 GO:0005515
Bma04g00023 353 Gene3D - 35 74 - -
Bma04g00023 353 PANTHER F-BOX SKP2A-LIKE PROTEIN 1 340 - -
Bma04g00023 353 SUPERFAMILY F-box domain 36 76 IPR036047 GO:0005515
Bma04g00023 353 Gene3D Ribonuclease Inhibitor 75 291 IPR032675 -
Bma04g00023 353 PANTHER UNCHARACTERIZED 1 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00023 K03875 SKP2, FBXL1; F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2) - jre:109013670 540.806
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g00287 Bma04g00023 CCT
Bma01g00879 Bma04g00023 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00879 Bma-Chr1:8252568 Bma04g00023 Bma-Chr4:304387 8.15E-177 dispersed
Bma04g00023 Bma-Chr4:304387 Bma11g00852 Bma-Chr11:29235029 3.24E-14 dispersed
Bma07g00569 Bma-Chr7:7945160 Bma04g00023 Bma-Chr4:304387 6.97E-13 dispersed
Bma09g00614 Bma-Chr9:43373221 Bma04g00023 Bma-Chr4:304387 2.51E-09 dispersed
Bma04g00023 Bma-Chr4:304387 Bma02g00287 Bma-Chr2:3324753 1.08E-179 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g136 . . . . . Bpe04g00016 Bma04g00023 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car09g00061 . Cpe02g00877 . . . . . . . . . . . . . . . . . .
Vvi18g1177 . Blo12g01113 . Bda03g00025 . Bpe04g00016 Bma04g00023 . Cmo04g02528 Cmo15g00645 . . . . . . Cpe13g00654 Bhi04g01835 Tan11g1207 . . Hepe02g2748 . Lcy10g1301 Cla08g00651 Cam08g1078 Cec08g0664 Cco08g0775 Clacu08g0782 . Cre08g0589 . Cone7ag1488 Cone17ag0806 Cone20ag0411 . . . Cme03g00431 Blo17g00229 Blo18g00227 . Bda13g01543 Bpe02g01595 Bpe14g00322 Bma01g00879 Bma02g00287 . . . . . Car04g02327 Car15g00586 . . . . . . . . . . . . . . . . Lsi08g00510 . Chy03g00570 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004343 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00023 Bma_Chr04 FPKM 20.768421 22.507349 15.148429 14.362634 4.53667 4.768338 4.721803 2.432562 2.429547 3.12531