Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00026 ATGTCGTCTCCGAGCCATGAACGCGGAGTTTCAGCTCTTGCTTCCGAAGATAATGGTTCGGATGAAACTTCTGTAACTAAACACTCGGCTTTCTTCGATATTTATGGTCCTCAGAGTGAAGCAGATGTTGTTTTCAAAACACCTGAATCGAACTCAACTTTAAATATACAAGACGTTCAAGGACTCATAACTTGGGTGCTTGGCGAAGGGTTCATGCCATCTTGGATTTTTGTGAAGAACAAGCCGCTCATTCCCAAAGTTGTTATGGTGTATCTTCCGGGACTGGATGCAGCTTTGTATTTATCACAATCTAAGATACTTTCTAGTTTTGAAGAATGCTGTGGCAATCCAAGAGCTGTATTAGCTCTTAGCTGTGTATCAGATGGGATGCAGACAATAGATGCACTCCTTACTTGCAAAATAAAAAGAAAAAGGGATAAAAGCTCTTTGGACTTGAAGAAGAACCAGAATTCTAAGCAAGAAGACTCTGGTGGTCCGACACATTTTTCGTCTTCCATTAAACTTATGAAAGATCTCCCTTTTCCCATTACATATTACACGCTCACCGCAAAAGAAATGGAAGACAACGGCTATTGCACCAATAAGCCAGGTTTTCTATCTACACTTCCTGCTCCTTTTGGATCCTTACCATACGAATTGTTGGCACTTGATTGTGAGATGTGTGTGACAAAAGAAGGTTTCGAGCTGACTAGAGTCACCCTGGTCGACATTAACGGACAGGTTGTGGTGGATAAATTGGTGAAACCTTTGAACCCTATTACAGACTACAATACAAGGTTCAGTGGAATTACAAGTGAGATGCTAAACGGAGTGTCTACAAGCCTAAAAGATGTTCAGGAAGAATTTTTGAATTTGGTTTACAAAGAAACTATCTTAGTTGGGCATTCTTTGGAAAATGACTTGATAGCTTTGAAGATTTCCCATGAGTTGGTTATTGACACTGCCGTAATGTACAAGTATCGTCGTGGTGCATCCCATAAAATTGCTCTTCGACATCTTGCCAAGAGATTTCTTTCCAAGGAGATACAGCAATTTGGAAATGGCCATGACAGCATTGAAGATGCCAGAGCTGCTTTGGAACTTGCTCTTCTGAAAATTAGACACGGGCCTGATTTTGGTTCACCCCCTTCATTTGTTCGGAAGAAGCTTCTGACTGTTCTTAGTGACTGTGGAAAGACCTCTTCTGTCATTGATGACATTTCCATAGTAAAACGATATACTTCTGAATCATCTCACGCATTTTCGGTATCATCTGATGAGGAAGCTTTTTCAAGAGCCAAGAAAGAGGTAAAGAATGAAAGAGTACAATTTATATGGACAGCTTTTTCGGAACTGAATTCTTATTACAAGAGACAAGCTGATAGTGAAGAGAAATTAAATGCAAAAGTTGCGGAGATGTTATCATTGCTTACATGCAATCAGAAATCTGTCAAAAGCAAAGGGGAGAGTGAGTGTAAGTTGGGCGCTGAGTTGAGAGAAATTTTAGCACGCATGGATGCTAGAATTCATGGCCTCTATGCCGCACTGCCTGCTAATGCCATGCTTATAATTTGCACTGGCCATGGTGACACCGCAATAGTTCAAAGGTTGAGGAAAATGCTGGCAGAGCAGGGTGAAACGATCGAATGCCGCGAAAAGATTGTGAAGGCTTTAGAAGAGCTCCAAGCTCGAGCAGAGGTTGCTTTATGTTTCGTAGGTGTAAAGCATTGA 1731 41.19 MSSPSHERGVSALASEDNGSDETSVTKHSAFFDIYGPQSEADVVFKTPESNSTLNIQDVQGLITWVLGEGFMPSWIFVKNKPLIPKVVMVYLPGLDAALYLSQSKILSSFEECCGNPRAVLALSCVSDGMQTIDALLTCKIKRKRDKSSLDLKKNQNSKQEDSGGPTHFSSSIKLMKDLPFPITYYTLTAKEMEDNGYCTNKPGFLSTLPAPFGSLPYELLALDCEMCVTKEGFELTRVTLVDINGQVVVDKLVKPLNPITDYNTRFSGITSEMLNGVSTSLKDVQEEFLNLVYKETILVGHSLENDLIALKISHELVIDTAVMYKYRRGASHKIALRHLAKRFLSKEIQQFGNGHDSIEDARAALELALLKIRHGPDFGSPPSFVRKKLLTVLSDCGKTSSVIDDISIVKRYTSESSHAFSVSSDEEAFSRAKKEVKNERVQFIWTAFSELNSYYKRQADSEEKLNAKVAEMLSLLTCNQKSVKSKGESECKLGAELREILARMDARIHGLYAALPANAMLIICTGHGDTAIVQRLRKMLAEQGETIECREKIVKALEELQARAEVALCFVGVKH 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 314405 320563 - Bma018477.2 Bma04g00026 80395

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00026 576 MobiDBLite consensus disorder prediction 1 24 - -
Bma04g00026 576 PANTHER LD29573P 14 561 - -
Bma04g00026 576 SMART exoiiiendus 219 378 IPR013520 -
Bma04g00026 576 CDD REX1_like 221 361 IPR034922 -
Bma04g00026 576 SUPERFAMILY Ribonuclease H-like 220 372 IPR012337 -
Bma04g00026 576 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 14 561 - -
Bma04g00026 576 Gene3D - 218 378 IPR036397 GO:0003676
Bma04g00026 576 Pfam Exonuclease 222 368 IPR013520 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00026 K14570 REX1, REXO1, REXO5, RNH70; RNA exonuclease [EC:3.1.-.-] - qsu:111984327 819.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00026 Bma-Chr4:314405 Bma15g00914 Bma-Chr15:32196846 1.54E-32 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1196 . Blo12g01111 . . . . Bma04g00026 . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1450 Cone7ag1482 . . . . . . . . . . . . . . . . . . . . Car09g00971 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009337 0 1 1 1 0 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 2 1 1 1 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00026 Bma_Chr04 FPKM 1.296528 2.512819 5.44346 5.294899 4.872114 5.288206 5.407109 6.316261 5.562932 6.398549