Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00027 ATGTCTCGGTCGCTGGTGCAGCCCGTCGGACAAAAGAGGCTGACGAACGTCGCTGTTGTTCGTTTAAAGAAGCATGGGATTCGCTTTGAGATTGCCTGCTACAAGAACAAGGTTCTCTCTTGGCGCTCTGGCGTAGAAAAGGATTTGGACGAAGTGTTGCAGTCACAGACCGTTTACACAAATGTTTCTAAAGGAGTTCTTTCCAAATCAAAAGATTTAGTTAAAGCTTTTGGGACAGAAGATCAGAGCAAAATTTGTTTGGAGATTTTGGATAAAGGAGAGCTTCAAGTTGCTGGGAAGGAGAGGGAAGCTCAATTGTCCAGCCAGTTTCGAGATATTGCAACCATTGTCATGCAGAAAACCTTCAATCCTGAGACTCAGCGCCCTTATACCATTAGCATGATTGAGCGACTTATGCATGAAATTCATTTTGCTGTTGATCCACATGGGAGCTCAAAAAAACAGGCCCTCGAAGTCATTCAAGAACTTCAGAAGCTTTTCCCGATCAAGCGCTCACCAATGAGAATAAGATTTACAATACCTGAACAGAAGTCACAGTCACTTCTTGAAAAGCTCAATGACTGGAATGCTACCATTGTGCTCCATAGACGAATCTGGAAGTCAGCTCTCTTTTGTAAGATTAACAATATAATCTGTGAATTGGATCCTAGCCTGTATAGAGACTGCAATCCCTTGATGAGCGATATGCAGGGAAGATTTGAAGTGCTCTCATTCTCTTCGCATGAGGAAGGAGAGGTTGAGCATTATGATGATCATGAATACATGGCACAACCAAAACTAGAGGAATTGGCTAATACTGAGAATGAGCTGAGTGAAAAGTTACAGAACCAGACAATCTCGACAAGTGGCAAGAGTGCACAGGCTGAGGGGAAGCGCTGTACCACCTGCAATGTATATTCGAGTGATTCCAGTCAGTTTAGGGAGCACCATAAGAGTGAATGGCACAAGCATAATGTAAAGCGCAAAACCCAAAATCTTTCTCCTCTAACTGAAGAAGAATGCAGAGTGGAAATGGAAGTCGGTGGCTCGAGGTCAGATTTGCAAGATTATTCATTTTAG 1080 43.15 MSRSLVQPVGQKRLTNVAVVRLKKHGIRFEIACYKNKVLSWRSGVEKDLDEVLQSQTVYTNVSKGVLSKSKDLVKAFGTEDQSKICLEILDKGELQVAGKEREAQLSSQFRDIATIVMQKTFNPETQRPYTISMIERLMHEIHFAVDPHGSSKKQALEVIQELQKLFPIKRSPMRIRFTIPEQKSQSLLEKLNDWNATIVLHRRIWKSALFCKINNIICELDPSLYRDCNPLMSDMQGRFEVLSFSSHEEGEVEHYDDHEYMAQPKLEELANTENELSEKLQNQTISTSGKSAQAEGKRCTTCNVYSSDSSQFREHHKSEWHKHNVKRKTQNLSPLTEEECRVEMEVGGSRSDLQDYSF 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 320865 323183 + Bma018478.2 Bma04g00027 80396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00027 359 PANTHER BNAANNG06530D PROTEIN 1 359 - -
Bma04g00027 359 Gene3D - 174 254 - -
Bma04g00027 359 Gene3D - 1 96 IPR036786 -
Bma04g00027 359 Coils Coil 267 287 - -
Bma04g00027 359 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Bma04g00027 359 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 359 IPR039100 -
Bma04g00027 359 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Bma04g00027 359 SUPERFAMILY beta-beta-alpha zinc fingers 294 342 IPR036236 -
Bma04g00027 359 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Bma04g00027 359 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Bma04g00027 359 Gene3D - 100 172 IPR037188 -
Bma04g00027 359 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Bma04g00027 359 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 198 IPR002140 GO:0042256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00027 K14574 - csv:101215380 503.056