Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00030 ATGGCTTTTCGTATTACTCACAGAAAGATTTGCCTTTCTTTATCAGCAGGAAAGTACCCGCGAGACAGCCCTGTAAAGTTTCGAGGAGATTCAGGAACCAAAGATGGGAGTTCCGCCAAACCACCAGCTGATCTTTTGGGCGGTTTCTACGATTCTGGAAACAACATGAAATTTACCTTCCCCACAGCTTATGCTATTACTCTTTTGAGTTGGAGTGTGATCGAGTATCACAAAAATTATGAAGCAATTGACGAGATTTTTACATCTATCAAACCCGAAGAAAGCTGGTCTGCCACTGAAGATGCTCTAGCAAATAGCAACTCAAAGGCTCTTAATGCAATATTTAATGGTGTTGGTAGCGCTAATAACGAGAGTAAAGTTCCTAATGATATCTGCTGGCAGAGACCGGAGGACATGGATTATGAGAGACTTGTTTCCAAATGTGATGCTAAGGCCTCTGATTTGGCCGGAGAAATCGTAGCTGCATTGTCGGCTGCATCGTTAGTATTTAGAGAAGATGAAAACTACGCCAGAAAATTAACCGGATCTGCAGAGAAGTTGTTTGAACTGGCCATCAACGAAGATGACGATCAAAAGGGAACTTACACCATGATTGATTCGTGTGGAGGGGAAGCAAGAAATTTTTACAACTCAACAGGGTTTGAGGATGAACTGATTTGGGCTGGAACCTGGCTGTTCTTCGCCACAGGGAATGCTTCTTACCTTGCATATTCAACTAACTCTGATCGATTAAAGTCGTCGGAGATCGATGAAGAGAGTTCTGATAGAGGGATCTTCTATTGGAACAACAAGCTCAGTGCCAATGAAGTAAATTCAAATCAAATTTCCATTCTGCTACTAAATTTTTTCAAGATCTTAGTTTCTTGGAACAAATGGCAGGTTTTGCTTACTCGAATTCGATATTTTCAAGATCTTGGCTACCCTTTTGAAAATGCTTTTGAACTATCGTCATCCATGACTGATTCCCTCATCTGCTCATATCTTTCTAGCCAATACAGTCGCACTCCAGGTGGATTGATCCTCCTGAGGCCTCATGAAGCCTCACTTCAATTTGCTGCCACAACATCATTTATCGTCACGTTATACTCCGATTATCTCCATCTTCTGCATAAAAAGAGCATTGCTTGCGGCGATTCTGCGTTTTCTGTGAAAGCTTTGCAGAGCTTTGCCCGGTCTCAGGCAAGTAAAATGCAAATGCCATGCCTTGGGGATTTGAATTTGAGAGTATTTACAGCTGATGAGCTGTTTTGTCAGGTTAATTACATATTAGGAGATAACCCGCAGAAAATGAGCTATATGGCTGGCTATGGAGACAAGTATCCGACCCATATTCATCACAGAGGCGCATCGATCCCATCGGACAGTAAGGCTGGCACTTGTGCAGAAGGGGAACGGTGGCTTTCGGCGAAGAATTCAAATCCAAATGTTCTTGTAGGAGCCATGGTTGCAGGGCCGAATGAGGTCGATAATTTCTTGGACGAAAGAGACAAGCCTTGGTTTACAGAGCCAAGCATTGCCGGGAATGCTGGTTTAGTGGCAGCTCTGATTGCCGTCCATGGGATTCCTGCTGATCCTTCTGCTTTGAAGGCCGGTAACTCGGGGATAGACCGAGATTACATGTTCAGAAAAATTGCCTCCATTCCGAATATGGCTCCTTGA 1680 43.57 MAFRITHRKICLSLSAGKYPRDSPVKFRGDSGTKDGSSAKPPADLLGGFYDSGNNMKFTFPTAYAITLLSWSVIEYHKNYEAIDEIFTSIKPEESWSATEDALANSNSKALNAIFNGVGSANNESKVPNDICWQRPEDMDYERLVSKCDAKASDLAGEIVAALSAASLVFREDENYARKLTGSAEKLFELAINEDDDQKGTYTMIDSCGGEARNFYNSTGFEDELIWAGTWLFFATGNASYLAYSTNSDRLKSSEIDEESSDRGIFYWNNKLSANEVNSNQISILLLNFFKILVSWNKWQVLLTRIRYFQDLGYPFENAFELSSSMTDSLICSYLSSQYSRTPGGLILLRPHEASLQFAATTSFIVTLYSDYLHLLHKKSIACGDSAFSVKALQSFARSQASKMQMPCLGDLNLRVFTADELFCQVNYILGDNPQKMSYMAGYGDKYPTHIHHRGASIPSDSKAGTCAEGERWLSAKNSNPNVLVGAMVAGPNEVDNFLDERDKPWFTEPSIAGNAGLVAALIAVHGIPADPSALKAGNSGIDRDYMFRKIASIPNMAP 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 330672 341688 + Bma018482.1 Bma04g00030 80399

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00030 559 Gene3D - 14 528 IPR012341 GO:0005975
Bma04g00030 559 PANTHER ENDO-1,4-BETA-GLUCANASE 15 278 - -
Bma04g00030 559 PANTHER ENDO-1,4-BETA-GLUCANASE 293 403 - -
Bma04g00030 559 PANTHER ENDO-1,4-BETA-GLUCANASE 424 551 - -
Bma04g00030 559 PANTHER ENDOGLUCANASE 424 551 - -
Bma04g00030 559 PANTHER ENDOGLUCANASE 293 403 - -
Bma04g00030 559 SUPERFAMILY Six-hairpin glycosidases 16 525 IPR008928 GO:0005975
Bma04g00030 559 Pfam Glycosyl hydrolase family 9 17 522 IPR001701 GO:0004553|GO:0005975
Bma04g00030 559 PANTHER ENDOGLUCANASE 15 278 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00030 K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] - csv:116405927 551.977
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00030 Bma-Chr4:330672 Bma04g00243 Bma-Chr4:2093152 6.78E-70 dispersed
Bma13g00305 Bma-Chr13:5444638 Bma04g00030 Bma-Chr4:330672 1.94E-61 dispersed
Bma04g00030 Bma-Chr4:330672 Bma05g00874 Bma-Chr5:46402224 1.01E-72 transposed
Bma04g00030 Bma-Chr4:330672 Bma01g02364 Bma-Chr1:81327550 1.41E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1227 . Blo12g01107 . Bda03g00032 . . Bma04g00030 . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1435 . . . . . . . . . . . . . . . . . . . Car05g00700 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011121 1 0 1 1 0 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00030 Bma_Chr04 FPKM 2.54563 3.875783 0.0 1.853871 4.815619 3.082825 0.0 0.0 1.668984 1.729894