Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00032 ATGGCAGATCTTGTTAGCTACGGGAATGCCGATCGTAACATTGACCATGCATTGATTGCTTTGAAGAAGGGTACTCAGCTACTTAAGTATGGTCGGAAAGGGAAGCCTAAGTTCTGTCCATTTAGACTTTCTATTGATGAGTCATCTTTGATTTGGATTTCAAGTGGTGGCGAAAAAAGTCTGAAGCTTGCTTCTGTATCTAGAATCATTCCTGGACAGAGAACTGTGGTTTTTCAACGATATTTGCGCCCTGAAAAGGATTATTTGTCTTTCTCTCTCATATACAATAACGGAAAGCGATCCCTTGATTTGATTTGCAAGGATAAAGTTGAAGCAGAGGTTTGGATTGCAGGGCTCAAATCATTGATAGCATCTGGTCAAGGTGGGCGTTCCAAAATTGATGGATGGAATGATGGAGGCTTCTACCTCGATGACAGCAGTGACATGACTTCGAACAGCCCGAGTGACTATTCAAATAGTGTCAATAGAGATATTTGCTCTCCTGAGGTCTCTGCTAATTTCAACCCAAACAAATCTCCTAAGAATATCAAACCTGAGAATTCTGTGATTGCTGAAAGGTCACATGCAGTTTCAAACCAGACAAATATGCAAGTAAAAGGATCAAGTTCAGATGCTTTTCGTGTCAGTGTTTCAAGTGCTCCGAGTACTTCTAGTCATGGTTCTGTGCCGGATGACTATGATGCTCTAGGGGATGTATACATATGGGGAGAGGTTATTAGTGATAACGTTGTGAAGTTTTCAGCTGAAAAAAATTATAATTGCACGAGCCTAAGGGTTGATGTACTTCTCCCCAGGCTATTAGAATCCAATGTAGTTTTAGACGTTGTTCATATAGCTTGTGGGGTTAGGCATGCCGCCGTAGTCACTAGGCAAGGCGAAATCTTTACATGGGGCGAGGAATCTGGTGGAAGGCTTGGGCATGGTGTGGGGAAGGATTACATTCAACCTCATCTAGTTGAATCTTTGGCAACTACTAATATTGATTTTGTTGCATGTGGAGAGTTCCATTCTTGTGCTGTTACAATGGATGGGGAACTTTACACATGGGGAGATGGTACTCATAATGCTGGGCTTCTTGGTCATGGCACTGACGTGAGCCATTGGATGCCAAAACGTATTGCAGGTCCCCTTGAGGGGCTTCAGGTTGCTTCAGTGGCATGTGGTCCATGGCACACAGCTTTGGTGACATCAATGGGGCAGCTTTTTACATTTGGTGATGGTACGTTTGGGGTGTTGGGCCATGGAGACAGAGAAAATGTTTCATATCCAAGAGAAGTGGAGTCTTTATCAGGCCTGAGAACAATTGCAGTTGCATGCGGGGTGTGGCATACTGCTGCTGCAGTAGAAGTTATTATGACACAATCTAGTGCAAGTGTTTCCTCGGGTAAGTTATTCACTTGGGGGGATGGAGATAAAAATCGATTAGGCCATGGTGATAAGGACCCTCGGCTTAAGCCTACATGTGTACCGGCATTAATTGATTACAACTTTCATAAAATCGCTTGTGGGCATAGTTTAACTGTTGCCTTGACTATATCCGGACAAGTGTTCACTATGGGAAGTTCTGTTTATGGTCAACTTGGGAATCCACAGGCTGATGGAAAGCAGCCTTGTTTGGTAGAAGATAAGCTTTTTGGGGAGTCTGTTGAGGAAGTGGCCTGTGGTGCTTATCATGTGTCAGTACTAACTTCCAAAAATGAGGTTTATACTTGGGGAAAGGGTGCAAATGGGAGGTTGGGCCATGGAGATGTTGAAGATCGCAAAGTACCAACTTTGGTTGATGTTTTGAAGGATAGACATGTGAAATATATTGCTTGCGGTTCAAACTACACAACTGCAATTTGTCTTCATAAATGGGTGTCAGGTGCTGAGCAGGCACAATGCTCTGCTTGCAGACAAGCTTTTGGTTTTACACGAAAGAGGCACAACTGCTATAATTGTGGCCTTGTCCACTGCCATTCCTGCAGTTCCAAAAAAGCCTTGAATGCTTCTTTAGCTCCTAATCCCTGCAAACCATACCGGGTGTGTGATTCTTGTTATTCTAAATTGATCAAGGTTTCAGATCCTAATATTAATAATAGGAGAGGTGCTATGCCTCGCCTCTCTGGGGAAAATAAGGACAGGTTAGATAAGAGTGACATAAGATTGTCAAAGTCTGTGCCTTCTAACATGGAGTTGATAAAGCAGTTAGATAGTAAAGCAGCCAAGCATGGAAAGAAGGCAGATACCTTCTCCCTTGGTCGTGCCTCTCAAGCACCTTCTCTATTGCAACTCAAAGAAGTTGTTTTGTCTACTGCAATTGACTTACGACAGCCAGCTCCGAAGCCTGTTCTTACAAATTCTGCCGTAAGTTCCAGATCTGTATCACCTTTCTATAGAAGACCAAGTCCCCCACGCTCTGCAACTCCTGTTCCAACAGCATCCGGACTCTCTTTCTCTAAGAGTATGACTGATAGTTTAAAGAAAACGAATGAATTATTGAATCAGGAGGTGGTTAAGTTACGTGCACAGGCAAGTATTTGTTTCGATCTCATAGTTGGGAGCCTCAAACAGAAGTGTGAACTTCAAGAGCTGGAGCTTCAGAAATCAGCAAGGAGAACACAAGAAGCAATGTCTTTGGCTGCAGAGGAATCTGCAAAATCTAAAGCAGCCAAAGAAGTCATCAAGTCTCTTACATCGCAGCTTAAAAACATTGCTGAGAGACTACCATCTGGAAGTTATGACATGGAGAGCATGAGAATTGTATATCTTCCGAATGGTTCGGAACTAAATGGTATCCATCATTTGGATACAAATAGAGAACGACATTCAAGATCTGATTCTCTTAATTCCGTTTCCTTGGTGTCTCCAAGGGCAAGCGACTCTGCGTCTGTAAATGGATTTCAAGTTCAAGCTCATTCATCTCAGGAACAACCTGCGACTGAAACTATGCAGGCAAATCCTTTACCTCTTATTTCTACTGGGATTGAGGAGCATCCCAATTTTAGACTGACAAATGGCGATGGTGGAGGTCCTACAAGTAATTGTAGTGTGTTGGCGGCTGCTGATAAGGAAAATCAGCATGTTCAAGATAGTGAAAACGGTGGGCGATCCGATACTTCTGAGTTTGCTGCCAATTCAAATCAAGTGGAGGCAGAATGGATTGAACAGTACGAACCTGGTGTATATATTACTCTCGTAGCTCTTCGTGATGGAACAAGAGATCTTAAACGAGTGCGCTTCAGCCGCAGAAGATTTGGAGAGAGTCAAGCTGAGAATTGGTGGTCGGAGAACCGAGAAAAGGTGTATGAGAGATACAACATTCGTGGTCTGGACAAGTCCTCAATTTCCGGGCAGCCTGCACGAAGATCAGAGAGGCCTATCTCGCCTGCTTCATCCATTGCGACGACGCAGGGAGAACGGATGTAA 3429 43.6 MADLVSYGNADRNIDHALIALKKGTQLLKYGRKGKPKFCPFRLSIDESSLIWISSGGEKSLKLASVSRIIPGQRTVVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKSLIASGQGGRSKIDGWNDGGFYLDDSSDMTSNSPSDYSNSVNRDICSPEVSANFNPNKSPKNIKPENSVIAERSHAVSNQTNMQVKGSSSDAFRVSVSSAPSTSSHGSVPDDYDALGDVYIWGEVISDNVVKFSAEKNYNCTSLRVDVLLPRLLESNVVLDVVHIACGVRHAAVVTRQGEIFTWGEESGGRLGHGVGKDYIQPHLVESLATTNIDFVACGEFHSCAVTMDGELYTWGDGTHNAGLLGHGTDVSHWMPKRIAGPLEGLQVASVACGPWHTALVTSMGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTIAVACGVWHTAAAVEVIMTQSSASVSSGKLFTWGDGDKNRLGHGDKDPRLKPTCVPALIDYNFHKIACGHSLTVALTISGQVFTMGSSVYGQLGNPQADGKQPCLVEDKLFGESVEEVACGAYHVSVLTSKNEVYTWGKGANGRLGHGDVEDRKVPTLVDVLKDRHVKYIACGSNYTTAICLHKWVSGAEQAQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSKKALNASLAPNPCKPYRVCDSCYSKLIKVSDPNINNRRGAMPRLSGENKDRLDKSDIRLSKSVPSNMELIKQLDSKAAKHGKKADTFSLGRASQAPSLLQLKEVVLSTAIDLRQPAPKPVLTNSAVSSRSVSPFYRRPSPPRSATPVPTASGLSFSKSMTDSLKKTNELLNQEVVKLRAQASICFDLIVGSLKQKCELQELELQKSARRTQEAMSLAAEESAKSKAAKEVIKSLTSQLKNIAERLPSGSYDMESMRIVYLPNGSELNGIHHLDTNRERHSRSDSLNSVSLVSPRASDSASVNGFQVQAHSSQEQPATETMQANPLPLISTGIEEHPNFRLTNGDGGGPTSNCSVLAAADKENQHVQDSENGGRSDTSEFAANSNQVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGESQAENWWSENREKVYERYNIRGLDKSSISGQPARRSERPISPASSIATTQGERM 1142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 355715 361704 + Bma018484.1 Bma04g00032 80401

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00032 1142 PRINTS Chromosome condensation regulator RCC1 signature 282 295 IPR000408 -
Bma04g00032 1142 PRINTS Chromosome condensation regulator RCC1 signature 392 408 IPR000408 -
Bma04g00032 1142 PRINTS Chromosome condensation regulator RCC1 signature 408 422 IPR000408 -
Bma04g00032 1142 PRINTS Chromosome condensation regulator RCC1 signature 301 317 IPR000408 -
Bma04g00032 1142 PRINTS Chromosome condensation regulator RCC1 signature 568 589 IPR000408 -
Bma04g00032 1142 PRINTS Chromosome condensation regulator RCC1 signature 351 367 IPR000408 -
Bma04g00032 1142 PRINTS Chromosome condensation regulator RCC1 signature 510 528 IPR000408 -
Bma04g00032 1142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 639 696 IPR013083 -
Bma04g00032 1142 Gene3D - 173 362 IPR009091 -
Bma04g00032 1142 Gene3D - 363 457 IPR009091 -
Bma04g00032 1142 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1114 - -
Bma04g00032 1142 SUPERFAMILY FYVE/PHD zinc finger 625 696 IPR011011 -
Bma04g00032 1142 Pfam FYVE zinc finger 625 690 IPR000306 GO:0046872
Bma04g00032 1142 Pfam Regulator of chromosome condensation (RCC1) repeat 299 347 IPR000408 -
Bma04g00032 1142 Pfam Regulator of chromosome condensation (RCC1) repeat 520 568 IPR000408 -
Bma04g00032 1142 Pfam Regulator of chromosome condensation (RCC1) repeat 406 453 IPR000408 -
Bma04g00032 1142 Pfam Regulator of chromosome condensation (RCC1) repeat 574 621 IPR000408 -
Bma04g00032 1142 Pfam Regulator of chromosome condensation (RCC1) repeat 350 401 IPR000408 -
Bma04g00032 1142 Pfam Regulator of chromosome condensation (RCC1) repeat 468 517 IPR000408 -
Bma04g00032 1142 ProSiteProfiles BRX domain profile. 1052 1107 IPR013591 -
Bma04g00032 1142 SUPERFAMILY RCC1/BLIP-II 236 626 IPR009091 -
Bma04g00032 1142 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 285 295 IPR000408 -
Bma04g00032 1142 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 573 624 IPR000408 -
Bma04g00032 1142 MobiDBLite consensus disorder prediction 1113 1142 - -
Bma04g00032 1142 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 392 402 IPR000408 -
Bma04g00032 1142 Gene3D - 13 129 IPR011993 -
Bma04g00032 1142 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 521 572 IPR000408 -
Bma04g00032 1142 Coils Coil 888 908 - -
Bma04g00032 1142 CDD PH_PLC_plant-like 12 124 - -
Bma04g00032 1142 MobiDBLite consensus disorder prediction 1025 1044 - -
Bma04g00032 1142 Gene3D - 460 638 IPR009091 -
Bma04g00032 1142 Pfam Transcription factor BRX N-terminal domain 883 916 IPR027988 -
Bma04g00032 1142 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 629 691 IPR017455 -
Bma04g00032 1142 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 299 350 IPR000408 -
Bma04g00032 1142 MobiDBLite consensus disorder prediction 783 818 - -
Bma04g00032 1142 SUPERFAMILY PH domain-like 17 123 - -
Bma04g00032 1142 Pfam Transcription factor regulating root and shoot growth via Pin3 1051 1106 IPR013591 -
Bma04g00032 1142 Coils Coil 824 844 - -
Bma04g00032 1142 MobiDBLite consensus disorder prediction 784 798 - -
Bma04g00032 1142 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1114 - -
Bma04g00032 1142 MobiDBLite consensus disorder prediction 698 717 - -
Bma04g00032 1142 SMART fyve_4 623 692 IPR000306 GO:0046872
Bma04g00032 1142 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 469 520 IPR000408 -
Bma04g00032 1142 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 237 298 IPR000408 -
Bma04g00032 1142 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 406 457 IPR000408 -
Bma04g00032 1142 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 351 405 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00032 - - - twl:119992163 1733.0
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00865 Bma04g00032 CCT
Bma02g00275 Bma04g00032 CCT
Bma01g02116 Bma04g00032 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00865 Bma-Chr1:8127306 Bma04g00032 Bma-Chr4:355715 0 dispersed
Bma02g00266 Bma-Chr2:2855244 Bma04g00032 Bma-Chr4:355715 0 dispersed
Bma02g00275 Bma-Chr2:3190142 Bma04g00032 Bma-Chr4:355715 0 dispersed
Bma04g00032 Bma-Chr4:355715 Bma07g01382 Bma-Chr7:49585386 0 dispersed
Bma15g00326 Bma-Chr15:3192764 Bma04g00032 Bma-Chr4:355715 1.32E-16 dispersed
Bma14g00177 Bma-Chr14:2326765 Bma04g00032 Bma-Chr4:355715 0 transposed
Bma01g02116 Bma-Chr1:77370540 Bma04g00032 Bma-Chr4:355715 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00032 Bma_Chr04 FPKM 11.648972 12.439178 17.263491 16.675541 13.395088 13.827156 15.266776 17.227942 16.089077 15.926316