Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00033 TTCTCCTTCTGCAGCCCTCCCATGGCTATTGACTTCATGGCCGGCTTCCCTAACGTTGCCGATCGACAGATGGCCCTCCAGGAGGCTGCCTCTCAAGGTTTGAAGAGCATGGAACACCTGATCTACGCCCTTTCTCAGAAGCAGCACTACAATCACTCCGATTGCACAGATCTCACCGACGCTGCGGTTTCCAAGTTCAACAAGGTCATTTCTCTTCTCAACCGGACCGGCCACGCGCGCTTCAGGCGCGGTCCCCTTCCCTCTCCCCCCCCATCGTCGACCTCCTCTGCCCCTCTCTCCCAGGCTTTGAGCCTTACCCCGACTACTTTCACTTCTCCCTCAACTGTCTCCAACCCTCCCATTGCGCCTCCGGCGAGCTTCGCTCTGCCTCAGCCGCCACAAAGCATGACTCTTGACTTCACGAAACCTAATGTTTTGAGCTCAAATCTCAAGAGTAACGACCTCGAGTTCACCAAAGACAGCTTCAGCGTCTCGTCAAGTTCCTCGTTCATGTCGTCGGCCATCACCGGAGACGGGAGCGTGTCAAATGGAAAGCTCGGACCTTCGATCTTCCTATCCTCCGCACCGGCAGTCTCCGCGGGAAAGCCGCCTCTCTCAGCGGCGCCCTACAAGAAGAGGTGTCACGAGCACTCGCAGTCTCATTCCCACTCCTACTCTCAGTCTCACTCCCACTCCCACTCGGAAAACATCTCCGGAAAACTTTCCGGTTCTACTTCCGCTTCCGGCAAGTGCCACTGCTCCAAAAGAAGGAAAAACCGTGTAAAGAAAACAATAAGAGTCCCGGCGGTGAGTTCAAAGATCGCGGACATTCCACCGGACGAGTATTCGTGGAGAAAATACGGACAGAAGCCGATCAAAGGGTCGCCATACCCACGGGGATACTACAAGTGCAGTACTGTGAGGGGATGCCCGGCGAGGAAACACGTAGAAAGGGCTCCGGACGATCCGAAGATGCTAATCGTAACGTACGAGGGAGAGCACCGGCATACGCAGGGGGCGATGCAGGAGAACATGGGCGGAGGAGTAGGGCTGGTGTTCGAGTCAACGTGA 1071 56.02 FSFCSPPMAIDFMAGFPNVADRQMALQEAASQGLKSMEHLIYALSQKQHYNHSDCTDLTDAAVSKFNKVISLLNRTGHARFRRGPLPSPPPSSTSSAPLSQALSLTPTTFTSPSTVSNPPIAPPASFALPQPPQSMTLDFTKPNVLSSNLKSNDLEFTKDSFSVSSSSSFMSSAITGDGSVSNGKLGPSIFLSSAPAVSAGKPPLSAAPYKKRCHEHSQSHSHSYSQSHSHSHSENISGKLSGSTSASGKCHCSKRRKNRVKKTIRVPAVSSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAPDDPKMLIVTYEGEHRHTQGAMQENMGGGVGLVFEST 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 369663 371397 + Bma018485.1 Bma04g00033 80402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00033 356 SUPERFAMILY WRKY DNA-binding domain 276 337 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma04g00033 356 PANTHER WRKY TRANSCRIPTION FACTOR 17-RELATED 21 355 - -
Bma04g00033 356 Pfam WRKY DNA -binding domain 280 336 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma04g00033 356 ProSiteProfiles WRKY domain profile. 273 339 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma04g00033 356 MobiDBLite consensus disorder prediction 223 250 - -
Bma04g00033 356 MobiDBLite consensus disorder prediction 79 136 - -
Bma04g00033 356 Pfam Plant zinc cluster domain 211 276 IPR018872 -
Bma04g00033 356 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 21 355 IPR044810 GO:0003700
Bma04g00033 356 MobiDBLite consensus disorder prediction 198 262 - -
Bma04g00033 356 Gene3D WRKY domain 263 339 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma04g00033 356 SMART WRKY_cls 278 338 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma04g00033 356 MobiDBLite consensus disorder prediction 95 116 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02124 Bma-Chr1:77734156 Bma04g00033 Bma-Chr4:369663 3.59E-160 dispersed
Bma01g02264 Bma-Chr1:79806697 Bma04g00033 Bma-Chr4:369663 2.63E-61 dispersed
Bma02g00060 Bma-Chr2:493419 Bma04g00033 Bma-Chr4:369663 1.43E-72 dispersed
Bma04g00033 Bma-Chr4:369663 Bma09g00258 Bma-Chr9:13682400 6.28E-73 dispersed
Bma04g00033 Bma-Chr4:369663 Bma01g00400 Bma-Chr1:3338515 5.44E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57103 PF10533 Plant_zn_clust 9.30E-15 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00033 - - bhj:120087087 462.996