Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00039 ATGTTTTCGAGCAGTCAGATCGACGCGGGCGTTGGATTCACGGCCTCTCAGTCCACCGATTCTGCTCCTTCTCTGGCAAAAAGTCGAGGAGCTCAAGGATTGATTCCGTTGACGGTGAAGCAGATAGGCGAAGCTTCTCAATCAGGAGATGAAAAGCCCAACTTATCAATTAATGGCGTTGATGTTACTAATGTGACGATAGTGGGAATGATGTTTGAGAAAACTGAAAGGAGGACCGATGTTGGTTTTTCTCTTGACGATGGGACCGGAAGGATCGGATGTAAAAGATGGGTGAATGATGCTTTTGACACAAAGCAAATGGAAGAGATTCAAGATGGAATGTATATACGAGTGAATGGGCACTTGAAGATTTTTGAAGGAGTCAAAAGAATAGTTGCATTTTCTGTTAGGCCTGTGACTAACTTTGACGAGGTCACCTTTCACTTTATTGAATGTATACATAACCACTTGGAGAATTCTAAGTCGCAAGGCAATGTGTTATCTCAGTCTCAGTCCGTTGATACATCTACAAAGGCTTCTATTCAGAGTGGATCCGATGGATATTACACAGCCGTTTCAGATCAATTTACTGGACAACACAGTGTTGATGGCCTAAAGAGTTGTGATCAGTTAGTCCTTGATTATCTGCAGCAACCGTCTAGCGTAGTAAAAGAAAGAGGGATACATAGGGATGAACTTTCCCAACAACTGAAAATTCCCATGGGAAAAATCTTGGAATCTATCAGATGTCTTGAAGAGGAAGGTCTGATATACTCCACAATCGATGAGTTTCATTACAAGTCAGCCGCATATGGGTAA 819 42.25 MFSSSQIDAGVGFTASQSTDSAPSLAKSRGAQGLIPLTVKQIGEASQSGDEKPNLSINGVDVTNVTIVGMMFEKTERRTDVGFSLDDGTGRIGCKRWVNDAFDTKQMEEIQDGMYIRVNGHLKIFEGVKRIVAFSVRPVTNFDEVTFHFIECIHNHLENSKSQGNVLSQSQSVDTSTKASIQSGSDGYYTAVSDQFTGQHSVDGLKSCDQLVLDYLQQPSSVVKERGIHRDELSQQLKIPMGKILESIRCLEEEGLIYSTIDEFHYKSAAYG 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 396027 399810 + Bma018490.1 Bma04g00039 80408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00039 272 SUPERFAMILY Nucleic acid-binding proteins 34 160 IPR012340 -
Bma04g00039 272 PIRSF RPA32 2 270 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bma04g00039 272 Gene3D - 30 162 IPR012340 -
Bma04g00039 272 Pfam OB-fold nucleic acid binding domain 65 136 IPR004365 GO:0003676
Bma04g00039 272 PANTHER REPLICATION PROTEIN A-RELATED 1 269 IPR040260 -
Bma04g00039 272 CDD RPA2_DBD_D 64 157 - -
Bma04g00039 272 Pfam Replication protein A C terminal 156 263 IPR014892 -
Bma04g00039 272 Gene3D - 198 270 IPR036388 -
Bma04g00039 272 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 1 269 - -
Bma04g00039 272 SUPERFAMILY Winged helix DNA-binding domain 203 269 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00039 K10739 RFA2, RPA2; replication factor A2 - zju:107420782 404.831
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00039 Bma-Chr4:396027 Bma07g00695 Bma-Chr7:14884322 1.32E-84 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g214 . . . Bda03g00040 . . Bma04g00039 . . . . . Car09g00447 . . . Cpe06g00385 . . . . . . . Cla05g01790 Cam05g1909 Cec05g1920 Cco05g1983 Clacu05g1902 Cmu05g1783 Cre05g1911 . Cone7ag1755 . . Lsi04g02184 Csa03g04392 Chy04g00310 . . . . . . Bpe04g00030 . . Sed05g1650 Cmo01g01597 Cmo09g00511 . . . . . . Bhi09g02337 Tan01g3718 Cmetu04g2121 . Hepe01g2077 Mch11g0615 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009047 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00039 Bma_Chr04 FPKM 1.9799 1.259219 0.0 0.525052 5.220396 4.900797 4.486787 0.421423 0.653467 0.0