Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00041 CTTCATACCAGATTTATCAGGCTTATCATCCCCATGGCTAGTCTTTGGGTTACACTCCCATCGCTTTCCCTCGCAAAAAAATTCTTCCTCGCTGAAAGGATCCGTTTCGGTCCTTCCTTTCGCTTTCAAATTATGCATTCAATCTCCGATTCCACTTCTGTTTCGCCGTCTTCGCCGCCGTTCCAGGTTCCTGGGCTAGATTCTGACCAGGTCGACCGGATTGCGGAGCAGACCTTTCAGAGGTACTCGTTGCCTTCTTCCTCTTCTTCGATTAAGAGGAGAGGCAAAGGTGTAGCAATTGTTTGGTTTAGGAATGATCTGAGAGTTCTGGACAATGAGGCTTTGTATAAAGCCTGGATTTCCTCCGAGACTGTGTTGCCGGTGTATTGCATTGATCCTCGGCTATTTGGCACTACTTATTACTTTGGATACCCTAAAACTGGCGCTCTTAGAGCGCAGTTCCTTATTGAATGCCTGACTGATCTGAAGAGGAACTTAATCCAGCGGGGACTTAACTTGCTCATTCAACAGGGAAAGCCTGAAGATATTATCCCTTCTCTCGCGAAAGCTCATGGTGCTCATACAGTCTATGCCCAACAAGAAACTTGCAGTGAGGAGCAAAAGGTCGAAAGAGCTGTTATCAAAGCTCTTCAGAGTGTGGGGTTACGACCATCACAAGATCAGTCTACCAATCAAAGGTCAAAAAGCAGCCCGAACTTGCATCTTGTTTGGGGCACCACTTTATACCACATAGAAGATCTCCCATTCACCACTAGCAATTTACCAGACGTGTATACTCAATTTCGAAAGTCTGTTGAAACCAAATGCACGGTTAGAGGGTGCATCAAAGTTCCGGTTTCTCTTGGGCCTCCTCCAAACATTGACGAATGGGGATGTGTTCCATCACTGGATCAAATGGGGCTTCAGTCTACAAATGTTAAGAGAGGGATGAAGTTCATCGGTGGGGAGAGTGCTGCACTCAGCAGAATAAATGAATATTTCTGGAAGAAGGATTTGTTGAAGATATATAAAAGTATAAGGAATGGGATGTTAGGTCCTGATTACTCAACAAAGTTTTCTCCATGGCTTGCTTCAGGAAGCCTCTCAGCACGGCTAATCCATGAAGAGGTTAGGAGATTCGAAAAGGAATGTATAGCAAATGAATCCACATACTGGGTTCTTTTTGAATTGATATGGAGGGATTACTTCAGGTTTCTTTCACTCAAATATGGGAATTCCCTCTTTCATCTCGGTGGTCCTAGAAAATTGCAATTGAGTTGGAGTCAAGACAAGAATATGTTTGAGTTATGGAGAGATGGACGGACTGGATATCCTCTTATTGATGCTAACATGAAAGAACTATCAGCAACTGGCTTCATGTCGAACCGAGGACGACAGATTGTGTGCTCCTTTCTTGTTCGAGATATGGGTATTGATTGGCGCATGGGAGCTGAATGGTTTGAGACTTGCCTTTTGGATTATGACCCATGCTCTAATTATGGAAATTGGACCTACGGAGCAGGAGTTGGTAATGACCCCAGGGAAGATCGTTATTTCAGCATACCCAAGCAGGCCCAAACTTATGATCCCGAGGGAGAATATGTTGCTTACTGGTTGCCTCAGCTAAGAATGCTACCCAAAGATAAGAGGAACTTCCCTGGAAAATCATACACTGAACAAGTTGTTCCTCTCAAGTATGGCAGTGTGGGAAGGCGTCCAAATCCAAACACAGCTTCGACTGAGAAAAGAAATTCAGGAGGGAGACAAACGAGAATATACAGGAGATAG 1788 44.46 LHTRFIRLIIPMASLWVTLPSLSLAKKFFLAERIRFGPSFRFQIMHSISDSTSVSPSSPPFQVPGLDSDQVDRIAEQTFQRYSLPSSSSSIKRRGKGVAIVWFRNDLRVLDNEALYKAWISSETVLPVYCIDPRLFGTTYYFGYPKTGALRAQFLIECLTDLKRNLIQRGLNLLIQQGKPEDIIPSLAKAHGAHTVYAQQETCSEEQKVERAVIKALQSVGLRPSQDQSTNQRSKSSPNLHLVWGTTLYHIEDLPFTTSNLPDVYTQFRKSVETKCTVRGCIKVPVSLGPPPNIDEWGCVPSLDQMGLQSTNVKRGMKFIGGESAALSRINEYFWKKDLLKIYKSIRNGMLGPDYSTKFSPWLASGSLSARLIHEEVRRFEKECIANESTYWVLFELIWRDYFRFLSLKYGNSLFHLGGPRKLQLSWSQDKNMFELWRDGRTGYPLIDANMKELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQLRMLPKDKRNFPGKSYTEQVVPLKYGSVGRRPNPNTASTEKRNSGGRQTRIYRR 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 402345 407543 + Bma018492.1 Bma04g00041 80410

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00041 595 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 317 550 IPR036134 -
Bma04g00041 595 MobiDBLite consensus disorder prediction 572 586 - -
Bma04g00041 595 TIGRFAM crypto_DASH: cryptochrome, DASH family 98 541 IPR014133 GO:0003913|GO:0006281
Bma04g00041 595 PANTHER CRYPTOCHROME 88 567 IPR002081 -
Bma04g00041 595 PANTHER CRYPTOCHROME DASH 88 567 - -
Bma04g00041 595 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 97 230 IPR006050 -
Bma04g00041 595 Gene3D HUPs 60 245 IPR014729 -
Bma04g00041 595 MobiDBLite consensus disorder prediction 566 595 - -
Bma04g00041 595 Pfam DNA photolyase 99 277 IPR006050 -
Bma04g00041 595 Pfam FAD binding domain of DNA photolyase 395 555 IPR005101 -
Bma04g00041 595 PRINTS DNA photolyase signature 442 458 IPR002081 -
Bma04g00041 595 PRINTS DNA photolyase signature 462 480 IPR002081 -
Bma04g00041 595 PRINTS DNA photolyase signature 501 515 IPR002081 -
Bma04g00041 595 Gene3D - 246 415 - -
Bma04g00041 595 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 416 570 - -
Bma04g00041 595 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 96 297 IPR036155 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00041 K25656 cry, CRYD; cryptochrome - zju:107420781 870.152
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00041 Bma-Chr4:402345 Bma10g01070 Bma-Chr10:30010357 2.90E-58 dispersed
Bma04g00041 Bma-Chr4:402345 Bma02g00784 Bma-Chr2:41664247 1.00E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g224 . Blo12g00706 . Bda03g00042 . . Bma04g00041 . . . Cma01g01604 . Car09g00443 . . . Cpe06g00379 . . . . . . . Cla05g01785 Cam05g1904 Cec05g1915 Cco05g1978 Clacu05g1897 Cmu05g1778 Cre05g1906 Cone4ag1845 Cone7ag1751 . . . Csa03g04387 Chy04g00315 . . . . . . Bpe04g00031 . . Sed09g1246 Cmo01g01651 Cmo09g00506 Cma09g00556 . . . . Cpe02g00374 Bhi09g02328 Tan01g3711 Cmetu01g0800 . Hepe01g2073 Mch11g0610 . . . . . . . . . . . Cme04g00288
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007699 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00041 Bma_Chr04 FPKM 8.940351 10.586444 9.757636 10.179807 8.761093 6.761765 8.138366 25.256542 15.908105 16.221985