Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00046 ATGGAGTCGACCATGGATGAGCAGTTGAACCATACTCAAGGTGATGGTGAAGCCTCGACACCCCTTACTGCAGTGGCGGAATCTCAATCACAGTCTCATGCTGGAGAAGAAGAAGTAGAAGAAGAGGAAGAAGGAGAAGAATTAAATGAGGATGGCGAGTTGATAGCCAAGGCTCAGAAGTTGATGGAGAAGATCACTTCTTCACCCGACAATCCTAATCCCACTGTCCTTCACGCTCTCGCCTCGCTCTTTGAAACCCAAGAGTCTCGGTATATGGAGGAGAATGGTTCATCCTCTAGTAATGGTCGTGCATCTCACAGCATTGGAAAGCTTGGGAATGTAGTTCGGGATAATGATGATTTTTTCGAGTTGATATCTTTTAAGCTTCTAGTAGAAACCAGATATTCGATGTCCATTCAAGCAGCTGCTGCAAGACTTTTATTAGGCTGTTCATTAACTTGGATGTATCCTCATATTTTTGAAGAAGACGTATTAGATAACATTAAAAAATGGGTGATGGAAGATGTTGCAAGACTTTCTGCTGAAGACCGGAATTGGAAGCTTGATTTGGGAGACCATGAAGTTTCTGATTCTGAAATGTTGCGTACCTATTCTACTGGACTTCTTGCTGTATGTTTGTCAGGTGGGGGCCCATTGCTAGAAGATGTATTGACATCTAGGTTGTCTGCCAAACTGATGCGCTATCTTCGTATTCGAGTACTTGGAGATACAAGTCAGAAAGACGTTATTCATTTGATAGAGACTAAGATTCCATCTGGTACCAGTGGAATGAAGAGTAGGGAAGAAAGTCGGGTGAGAGCTCGGCAGGTTCACGAAACATCACATTTTGATGATTTGAGGGTTGCTGATGAGAGATCTTTGGACGAACAAAGTTTTGGTAAGCCTCTTCATGATAAAGAACACTGCATTGAAGGTGGAGAAGGTCCTGAGGAGTTGGCTGAAGGGGTTGATTTTTATAGAGTTGATGCAGATGAGGAGAACAGGTGGAAAACTCGAGATTTGCGTGATGCGAGGACAAAATGTGGTGATCTTGATGATAATGCAAGAGACGACACAGCAAGGCGGAGGGTAAATCGTGGAAGGGTCAGAGGAAAAGGAAAGGGTAATGAAGCTTCTGTTGATACTGACCAGATTTTAACCTCACCCAGTTCTGGTAACCAATATCAAAATGCAAGAGAAAGGAGTTTGTTAAGAAATCCGGATGTAAAGAAATTACATGACACGAGTAAGAATTCAAGCAGGATCAATACTGATTCTATGGCTTTTGAGAGAGAGGAAACTGACGACTGCTTCCTGGAGTGTAAAATTGGAACTACGAATATTTCAGACATGGTTAAGAAAGCTGTTAGAGCAGCTGAAGCTGAAGCCAGAGCAGCTAATGCACCTTTGGAAGCCATTAAAGCTGTTGGTGATGCTGCTGCCGAAGTTGTCAAAAGTGCAGCTTTAGAGGAATTTAAGACTTCCAATAATGAACAAGCTGCAGTTTTGGCTGCTTCTAGAGCAGCATCTACTGTAATTGATGCAGCCAACGCCATTGAGGTTTGCAGGGGGTTGAACAGTGAAAATGATGGTTTAAGTAATATAGTTGATGTCTTTGAAAAGGAATTAGATGAGGTTGTTGACGAGTTTTTTATCCCAAATACCGAGTCCCTTGCTCAGCTTAGAGAAAAATACTGTATTCAGTGCCTTGAGATACTTGGGGAATATGTTGAAGTTTTGGGACCTGTACTGCGTGAAAAGGGTGTAGAAGTATGCCTTACACTTCTGCAAAGGAGTTCTAAACATAATAACACGTTGAAAATGGGAATGTTTTTGCCTGACGTGATGAAGTTAATTTGTGCTTTGGCTGCTCATCGGAAGTTTGCTGCATTGTTTGTGGATCGGGGCGGAATACAGAAGCTACTTGCTGTCCCAAGAGTTGCTCATAGCTGGTTTGGTCTTTCTTCATGCTTATTCACGATTGGTTCTCTTCAGGGGATAATGGAGCGTGTCTGTGCCCTTCCTTCAGATATTGTCAATCAGGTGGTTGAGTTAGCTATTCAACTTCTTGAGTGTCCCCAAGATCAAGCAAGAAAAAATGCAGCCTTATTTTTTGCTGCTGCATTTGTTTTTAGAGCGGTTCTTGATGCTTTTGATGCACAAGATGGTTTACAAAAAGTACTTGGGCTTTTAAATGAGGCTGCGTCTGTGAGGACGGGGGTAAATTCTGGGACGTTAAACTTTCCTAGTACAGGATCATCGAGGAATGAGAGATCAGCATCAGAAGTATTGACATCCTCTGAGAAACAGATAGCTTATCACACTTGTGTTGCTTTACGACAATATTTCAGAGCGCATCTGCTCTTGCTTGTTGAGTCTGTTCGCCCAAATAAGAATAGTCGAAGTGCCACTCGAAATATTCCTAGTGTACGTGCTGTGGACAAGCCACTTGACATTAGCAATGAGGCTCTGGATTCAGTTTTTCTCCTGTTACAGAAGGATAGGAAGCTTGGGGCTTCGTTTGTAAGATCCCGATGGCCTGCTGTTGAGAAGTTTTTGAGTGCTAATGGACATATAATCATGTTGGAGTTATGTCAGGCGCCACCAGTGGAACGTTACTTGCATGATCTGCTTCAATATGCGTTGGGTGTTCTTCACATCGTTACATTGGTACCTAACAGCCGTAGGATGATTGTGAATGCCACATTGAGCAATAATCGGGTTGGTATAGCAGTCATTTTGGATGCAGCTAGTGTCGCCAGTAACTTTGTGGATCCTGAGATCATTCAGCCAGCATTAAACGTGTTGATTAATCTTGTTTGCCCTCCACCTTCAATCAGCAATAAGCCATCTTTATTGCCACAAGGTCAGCAGTCTGTTTCTGCTTTCACCTCTGTAGGCCCTGCTTTGGACACTAGAGATAGAAATGCAGATCGTAATACCTCAGATCGGGCTGTTTATGTGTCTAGCCAGGGTGATCAAAGAGAAAGGAACGGGGAGACTAATTATGTAGAAAGAAGCTCTACTTGTTCACTGGCTACTAGTAACAATACACAGACCCATGTTTCAATAGCAGCTTCAGGATTAGTAGGTGATCGTAGAATAACCTTAGGTGCTGGGGCAGGTTGTGCTGGCCTTGCTGCGCAGTTGGAACTGGCTTATCGTCAAGCAAGAGAGGCTGTCCGTGCCAACAATGGTATCAAGGTTCTACTACACCTCCTGCAGCCCAGAATATATTCACCTCCTGCAGCTCTTGACTGTCTTCGTGCTCTTACATGTCGCGTGCTTCTAGGTTTGGCTAGAGATGATACTATCGCCCATATATTAACAAGGCTGCAGCGTTGGGAAATATATCTTGTAAAAGCTAGTATCTGCTTCATGCAATATTGTCCGTTATTCCAATCCAATAAATTTCTTGTCGCATCACAAAAATCTACTACTTTGTATATAGACTTTAAGACTCTGATATTTTGGCTTACTGTTCTTCAACATTATTATCAATTATATAAACTGCTACTTGACCTTATTGTAACAAACTCAGGTCGTGCAAGTGCATTAGCAGCTAGTGATGCTGCTACCCCTACTTTGAGACGCATAGAAAGAGCGGCCATTGCTGCTGCCACTCCTATCACTTACCACCCCAGGGAACTTTTGCTCTTAATTCACGACCACCTGCAGGCATCTGGGATGGCCACAACTGCTGCTGCACTTCTGAAAGAGGCTCAGTTGACACCTTTGCCATCCTTAGCGGCCCCATTGTCCATTGGATACCAATCTTCCGTGCAAGATGTCCTGTCTGTACTGCCTCAGTGGCCTTCTGGTCGGTCCCAAGGTGGGTTACTCACTGGGAAAGCAAAGCCAACTGTACGGGCAGATGAATCGATCTTAAAATGTGACTCAACTTACTCGATTTCAAAGAAAAAGCCTTTGATTTTCTCTCCCTCTTTTGGTTTGCACCATAGAAGCCAGCCTAAATCCATTGACTCACACCCACCATCAACGAGGAAGGTACCTACCATAAAACAACCTTGTGTAACTGCTGGCGCGTCACAAACTCTTTCAGAACTGTCCCAGAAACCAACTGCTGATGCAGAGGCTCATTGTAAAACACCAGTTGTATTGCCGATGAAACGAAAGTTGTCTGAGCTTCCGGATAATGGCAGTTTGTCTTCCTCCTTGAAGCGACTCAATACCTGCGAGCAAGGATTTTCGTCTCCGATTTGTTTAACACCCAGCTCCTTGCGAAAAAGTGGTTTTGCAGCTGATGTTGAGTTTTCTACACCAAATGCTTACCCAAGAGATCACCAGGGACGACCAACAACTGGTTGCCTGGCAGATAATTTGGATGACGTTCAAAACTCTAACTTTCACATTGGAGGTCAGGTCACACCAGCGGCCCATGCTGGAGCTCCAAATGACCCTCAGCCCAGCACCACAGAGAGATTAACGTTAGACTCACTTGTTGTTCAGTACCTAAAACACCAGCATCGGCAATGTCCGGCACCCATAACAACACTGCCTCCTCTCTCTCTGCTAAACCCTCATATTTGCCCTGAACCCAAACGAAGCCTTGATGCCCCATTGAACATTACAGCTCGCCTTGGTTCTCGTGAGTTTAGAAATGTTGGTGGGGTACATGGAAGTCGTCGGGATCGTCAGCTTGTTTACAGCAGATTTAGGCCTTGGAGAACTTGTCGGGATGATGTTGGTGCTCTTTTAACATGTATCACTTTTCTCGCGGACTCATCTCATGTAGTAGTTGGTAGTCACTCAGGAGAGATAAAAGTTTTTGAAAGCAATAGCAACGGTGTGATAGAAAGTTGCACCAGCCACCAGTCCCCTCTGACACTTGTTCAGTCATATCGCACTGGTGAGACCCAACTGTTGCTTTCTTCGAGCTCACAGGATGTGAGGTTGTGGGATGCATCTTCAGTATCTGGCGGACCCATGCATTCTTTTGAAGGATGTAAGGCTGCAAGGTTTAGCAATTCTGGGAACACTTTTGCAGCCATGTCAACAGAGATTTCCCAGCGTGAAATTCTCTTATATGATATTCAAACCTCCCATTTGGAGTTAAAATTATCTGACACATCCCCTAATTCTACTGGTCGTGGGCATATTTATTCCCTCGTGCATTTTAGCCCTTCTGATTCAATGCTTCTATGGAATGGAGTCCTGTGGGACAGACGGGTTTCAGGACCAGTCCACCGATTTGATCAGTTTACCGACTATGGGGGTGGTGGTTTTCACCCAGCTGGAAATGAGGTTATTATAAACTCTGAAGTCTGGGATCTTCGGAAGTTCAGGCTCCTCCGAAGTGTACCTTCTCTAGATCAAACATCACTAACATTTAATGCACGTGGGGATGTAATATATGCAATCTTGAGGAGAAATCTAGAGGATGTAATGTCAGCACTTCACACTCGACGAGTTAAGCACCCCCTTTTCGCTGCCTTCCGCACCATTGACGCAGTTAATTATTCTGACATTGCTACTATTCCCTTGGACCGATGTGTCCTTGACTTTGCAACGGAGCAAACTGATTCATTTGTTGGGTTGATTACTTTGGATGATCAACAAGAAATGTTTTCATCTGCTAGGGTATATGAAATTGGTCGCCGAAAGCCTACTGATGATGACTCTGATCCAGATGATGCAGAGAGTGAGGAGGACGAAGATGATGAGGACGATGATGATGTGGATATGGACGTCATTTTGGGCCATGATATTGATGGAGATGATCACAGTGATCCAGATGATCTCAGCGGTGACGATGACAGCTTGAGTGAGCTCGATGATGATGATGGAGATTTCATCATGAATGGTGTTGACTTAGATGGCGGGGCTGGAATTTTAGAAAATGGCACCGAGGGCGAGGAGGATGGCCATCGTGCTGGATCTTTCAGTAGCGAGGACGAGGACGAGGATATTTTCAATACGAACTTTTTTGGCTATTAA 5958 44.23 MESTMDEQLNHTQGDGEASTPLTAVAESQSQSHAGEEEVEEEEEGEELNEDGELIAKAQKLMEKITSSPDNPNPTVLHALASLFETQESRYMEENGSSSSNGRASHSIGKLGNVVRDNDDFFELISFKLLVETRYSMSIQAAAARLLLGCSLTWMYPHIFEEDVLDNIKKWVMEDVARLSAEDRNWKLDLGDHEVSDSEMLRTYSTGLLAVCLSGGGPLLEDVLTSRLSAKLMRYLRIRVLGDTSQKDVIHLIETKIPSGTSGMKSREESRVRARQVHETSHFDDLRVADERSLDEQSFGKPLHDKEHCIEGGEGPEELAEGVDFYRVDADEENRWKTRDLRDARTKCGDLDDNARDDTARRRVNRGRVRGKGKGNEASVDTDQILTSPSSGNQYQNARERSLLRNPDVKKLHDTSKNSSRINTDSMAFEREETDDCFLECKIGTTNISDMVKKAVRAAEAEARAANAPLEAIKAVGDAAAEVVKSAALEEFKTSNNEQAAVLAASRAASTVIDAANAIEVCRGLNSENDGLSNIVDVFEKELDEVVDEFFIPNTESLAQLREKYCIQCLEILGEYVEVLGPVLREKGVEVCLTLLQRSSKHNNTLKMGMFLPDVMKLICALAAHRKFAALFVDRGGIQKLLAVPRVAHSWFGLSSCLFTIGSLQGIMERVCALPSDIVNQVVELAIQLLECPQDQARKNAALFFAAAFVFRAVLDAFDAQDGLQKVLGLLNEAASVRTGVNSGTLNFPSTGSSRNERSASEVLTSSEKQIAYHTCVALRQYFRAHLLLLVESVRPNKNSRSATRNIPSVRAVDKPLDISNEALDSVFLLLQKDRKLGASFVRSRWPAVEKFLSANGHIIMLELCQAPPVERYLHDLLQYALGVLHIVTLVPNSRRMIVNATLSNNRVGIAVILDAASVASNFVDPEIIQPALNVLINLVCPPPSISNKPSLLPQGQQSVSAFTSVGPALDTRDRNADRNTSDRAVYVSSQGDQRERNGETNYVERSSTCSLATSNNTQTHVSIAASGLVGDRRITLGAGAGCAGLAAQLELAYRQAREAVRANNGIKVLLHLLQPRIYSPPAALDCLRALTCRVLLGLARDDTIAHILTRLQRWEIYLVKASICFMQYCPLFQSNKFLVASQKSTTLYIDFKTLIFWLTVLQHYYQLYKLLLDLIVTNSGRASALAASDAATPTLRRIERAAIAAATPITYHPRELLLLIHDHLQASGMATTAAALLKEAQLTPLPSLAAPLSIGYQSSVQDVLSVLPQWPSGRSQGGLLTGKAKPTVRADESILKCDSTYSISKKKPLIFSPSFGLHHRSQPKSIDSHPPSTRKVPTIKQPCVTAGASQTLSELSQKPTADAEAHCKTPVVLPMKRKLSELPDNGSLSSSLKRLNTCEQGFSSPICLTPSSLRKSGFAADVEFSTPNAYPRDHQGRPTTGCLADNLDDVQNSNFHIGGQVTPAAHAGAPNDPQPSTTERLTLDSLVVQYLKHQHRQCPAPITTLPPLSLLNPHICPEPKRSLDAPLNITARLGSREFRNVGGVHGSRRDRQLVYSRFRPWRTCRDDVGALLTCITFLADSSHVVVGSHSGEIKVFESNSNGVIESCTSHQSPLTLVQSYRTGETQLLLSSSSQDVRLWDASSVSGGPMHSFEGCKAARFSNSGNTFAAMSTEISQREILLYDIQTSHLELKLSDTSPNSTGRGHIYSLVHFSPSDSMLLWNGVLWDRRVSGPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTSLTFNARGDVIYAILRRNLEDVMSALHTRRVKHPLFAAFRTIDAVNYSDIATIPLDRCVLDFATEQTDSFVGLITLDDQQEMFSSARVYEIGRRKPTDDDSDPDDAESEEDEDDEDDDDVDMDVILGHDIDGDDHSDPDDLSGDDDSLSELDDDDGDFIMNGVDLDGGAGILENGTEGEEDGHRAGSFSSEDEDEDIFNTNFFGY 1985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 420387 429286 + Bma018497.1 Bma04g00046 80415

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00046 1985 MobiDBLite consensus disorder prediction 347 423 - -
Bma04g00046 1985 MobiDBLite consensus disorder prediction 964 1009 - -
Bma04g00046 1985 SMART Lish 1213 1245 IPR006594 GO:0005515
Bma04g00046 1985 MobiDBLite consensus disorder prediction 1956 1971 - -
Bma04g00046 1985 MobiDBLite consensus disorder prediction 403 418 - -
Bma04g00046 1985 MobiDBLite consensus disorder prediction 36 50 - -
Bma04g00046 1985 MobiDBLite consensus disorder prediction 1 50 - -
Bma04g00046 1985 Gene3D - 1559 1883 IPR015943 GO:0005515
Bma04g00046 1985 SUPERFAMILY ARM repeat 162 936 IPR016024 -
Bma04g00046 1985 SUPERFAMILY WD40 repeat-like 1568 1791 IPR036322 GO:0005515
Bma04g00046 1985 MobiDBLite consensus disorder prediction 380 401 - -
Bma04g00046 1985 PANTHER BNAA03G51310D PROTEIN 1307 1869 - -
Bma04g00046 1985 MobiDBLite consensus disorder prediction 1868 1985 - -
Bma04g00046 1985 ProSiteProfiles LIS1 homology (LisH) motif profile. 1213 1245 IPR006594 GO:0005515
Bma04g00046 1985 PANTHER VPRBP PROTEIN-RELATED 1307 1869 IPR033270 GO:0016567
Bma04g00046 1985 PANTHER VPRBP PROTEIN-RELATED 1012 1309 IPR033270 GO:0016567
Bma04g00046 1985 MobiDBLite consensus disorder prediction 1882 1904 - -
Bma04g00046 1985 MobiDBLite consensus disorder prediction 1916 1940 - -
Bma04g00046 1985 MobiDBLite consensus disorder prediction 1 32 - -
Bma04g00046 1985 MobiDBLite consensus disorder prediction 294 316 - -
Bma04g00046 1985 MobiDBLite consensus disorder prediction 347 377 - -
Bma04g00046 1985 PANTHER BNAA03G51310D PROTEIN 1012 1309 - -
Bma04g00046 1985 PANTHER BNAA03G51310D PROTEIN 41 982 - -
Bma04g00046 1985 MobiDBLite consensus disorder prediction 982 1009 - -
Bma04g00046 1985 PANTHER VPRBP PROTEIN-RELATED 41 982 IPR033270 GO:0016567
Bma04g00046 1985 SMART WD40_4 1558 1598 IPR001680 GO:0005515
Bma04g00046 1985 SMART WD40_4 1601 1641 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00046 K11789 DCAF1, VPRBP; DDB1- and CUL4-associated factor 1 [EC:2.7.11.1] - csv:101214457 2379.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02141 Bma-Chr1:77936274 Bma04g00046 Bma-Chr4:420387 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g259 . . . Bda03g00046 . . Bma04g00046 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe04g00034 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005904 2 1 2 2 2 1 2 1 2 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00046 Bma_Chr04 FPKM 1.925839 1.161357 0.13564 0.371167 18.570251 20.498363 17.128937 0.091036 0.038801 0.027253