Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00048 TCGACTATGGCGTCGCCGGGAACCAGGTCGCCGTTACCGTTTCTTTTGAGGAGAAAATCAAGCGGGGAAATAAAAAACTTGACGTCCGTTTCGAGTAGCCTCTTGCCGGCGTTCGGAACAGTGGTCGACGATGGATATTTACACCTCAGAAAATTCATTATCGTTCCCTATGATCGTAGATATCGGTTATGGCAGACCTTTCTAGTTGTATTGGTGGTGTACTCAGCGTGGGCATCTCCTTTCGAACTAGCCTTCAAAAAGGTGGCAACTGGATCTCTCCTACCCGTTGATTTGGCTGTCAATGGATTCTTTGCCATTGATATAGTCTTAACTTTCTTTGTCGCTTACTTGGACAAATCAACCTATCTCCTCGTTGATGATCATAAGAAGATAGCTAAAAGGTATGTTACGAGCATGTGGTTCACGATGGATGTTGCTTCGACCCTTCCTTATCAAATAATATACAAACTTATCACAGGAAACTTGCACCGTGGTGAGACCTTTGGTTTCCTCAACTTTCTGCGCTTATGGCGACTTAGGCGTGTTAGTCAACTCTTTGCTAGGCTGGAGAAAGATACACGCTTTAGCTACTTTTGGACAAGATACTTCAAACTAATTTGTGTGACGTTGTTTGCAGTGCATGCAGCAGGGTGCTTTTACTTTTGGATGGCAACTCGTTATAAATCCTCTCAAAACACATGGATTGGACTGGATGTCCCGAACTTTGAGCAGCAAAGCATTTGGCTCAGCTACACTTACTCCATGTACTGGTCCATCGTCACCTTAACTACAGTAGGCTATGGAGACTTGCACGCAGTCAATATTGGGGAGAAGATATTTAGCATCTTCTACATGCTCTTCAACATTGGTCTCACAGCTTATTTGATTGGCAACATGACCAATCTCATCGTCCACAGTGCTGCTCAAACCTTTGCCATGAGAGATGCAATCAATGAGATACTTACATATGCAAGCAAGAGTAGACTCCCAGAAGGGTTGAAGGACCAGATGCTGGCACACATGCAGCTCAAGTTCAAGACAGCGGAGCTGCAGCAAGAAGAAGTGCTTGGGGACTTGCCTAAAGCAATAAGATCGAGCATTGCTCAGCACCTGTTTCGAAGAACAGTGAAAGATTCATACCTATTCAAGGGAGTCTCTGAAGATCTCATTGTGCAATTGGTATCAGAGATGAAAGCTGAATATTTTCCGCCCAAAGTGGAAATTATATTGCAGAACGAGATACCCACAGATTTCTACATTTTGGTGTCTGGATCAGTGGACTTGTTGTTTTTACAGTTTTTAGCAAAAATGGGACCTGGAGACATGGTAGGAGAAATAGCAGTACTGTTTAATATTCCACAAACTTTCACCGTGAGAACAAAGAGGCTTTCTCAAGTTGTGCGCGTCAGTCATCATCATTTCAAGCAAGTGGTACAACCACACAATGATGGAAAGACAATCATCTCTAACTTCATACAGGTTTGGAAATTGCGGATCTTAAAGTACATCAGTCAATCTATATTTACTTGTTTAGATGGAGACCGGTGTATAATTCTGTTGCTCAATCATATTAATACAATTAAATGTTTTTATTTCACAGGAAGATTGGAAACTTTTATGCCATTACGATCAACACATTGCAAGAGGGTGATAATTTATGGACATCATCCAGATGAAAACGTCAATAATGGCGACAGCATGGGAAAACTAATACTTCTACCACACTCAGTAGAAGAAATCCTCATATTGGCAGAGAAAAAGTTTGGCAAAAGAGGAAATACAATTCTAATGGCTGATGGCTCAGAGGTAGAAGACCTGAATGCTTTAAGAGAGAGCGACCACTTATTTATTGTTTGA 1857 41.79 STMASPGTRSPLPFLLRRKSSGEIKNLTSVSSSLLPAFGTVVDDGYLHLRKFIIVPYDRRYRLWQTFLVVLVVYSAWASPFELAFKKVATGSLLPVDLAVNGFFAIDIVLTFFVAYLDKSTYLLVDDHKKIAKRYVTSMWFTMDVASTLPYQIIYKLITGNLHRGETFGFLNFLRLWRLRRVSQLFARLEKDTRFSYFWTRYFKLICVTLFAVHAAGCFYFWMATRYKSSQNTWIGLDVPNFEQQSIWLSYTYSMYWSIVTLTTVGYGDLHAVNIGEKIFSIFYMLFNIGLTAYLIGNMTNLIVHSAAQTFAMRDAINEILTYASKSRLPEGLKDQMLAHMQLKFKTAELQQEEVLGDLPKAIRSSIAQHLFRRTVKDSYLFKGVSEDLIVQLVSEMKAEYFPPKVEIILQNEIPTDFYILVSGSVDLLFLQFLAKMGPGDMVGEIAVLFNIPQTFTVRTKRLSQVVRVSHHHFKQVVQPHNDGKTIISNFIQVWKLRILKYISQSIFTCLDGDRCIILLLNHINTIKCFYFTGRLETFMPLRSTHCKRVIIYGHHPDENVNNGDSMGKLILLPHSVEEILILAEKKFGKRGNTILMADGSEVEDLNALRESDHLFIV 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 469210 474604 + Bma018499.1 Bma04g00048 80417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00048 618 Pfam KHA, dimerisation domain of potassium ion channel 548 617 IPR021789 -
Bma04g00048 618 PANTHER POTASSIUM CHANNEL AKT1 63 617 IPR045319 GO:0005249|GO:0006813
Bma04g00048 618 PANTHER POTASSIUM CHANNEL AKT1 4 62 IPR045319 GO:0005249|GO:0006813
Bma04g00048 618 Gene3D - 62 305 - -
Bma04g00048 618 SMART cnmp_10 381 493 IPR000595 -
Bma04g00048 618 SUPERFAMILY cAMP-binding domain-like 309 483 IPR018490 -
Bma04g00048 618 ProSiteProfiles cAMP/cGMP binding motif profile. 381 483 IPR000595 -
Bma04g00048 618 ProSiteProfiles KHA domain profile. 549 618 IPR021789 -
Bma04g00048 618 Gene3D Jelly Rolls 349 501 IPR014710 -
Bma04g00048 618 CDD CAP_ED 381 481 IPR000595 -
Bma04g00048 618 PANTHER POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG-RELATED 63 617 - -
Bma04g00048 618 Pfam Ion transport protein 62 306 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bma04g00048 618 PANTHER POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG-RELATED 4 62 - -
Bma04g00048 618 Pfam Cyclic nucleotide-binding domain 401 479 IPR000595 -
Bma04g00048 618 SUPERFAMILY Voltage-gated potassium channels 56 304 - -
Bma04g00048 618 PRINTS EAG/ELK/ERG potassium channel family signature 108 117 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bma04g00048 618 PRINTS EAG/ELK/ERG potassium channel family signature 295 304 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bma04g00048 618 PRINTS EAG/ELK/ERG potassium channel family signature 277 288 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bma04g00048 618 PRINTS EAG/ELK/ERG potassium channel family signature 97 107 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bma04g00048 618 PRINTS EAG/ELK/ERG potassium channel family signature 251 268 IPR003938 GO:0005249|GO:0006813|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00048 Bma-Chr4:469210 Bma07g00455 Bma-Chr7:5495345 6.51E-06 dispersed
Bma01g02145 Bma-Chr1:77959850 Bma04g00048 Bma-Chr4:469210 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00048 K21867 - csin:114306787 875.159