Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00050 ATGAAGAAAAATATTCACTTTCTCCTCTTTTCCACTCTAGTTTTGCTATTTTCTCTGGCCAATTCTCAACAACAGCCTGTTTTTGATTTCCACGATGCGGAAATCGAGGTGCCGTCCTCGCTAGTCTTCGAAAATCCAAGAATCAAGAAGGCTTATATTGCCCTCCAAGCATGGAAGCAAGCCATCGTCTCCGATCCCTTCAACCTGACCTCCAACTGGGTGGGATCCGACGTCTGCAACTACACAGGGGTTTTCTGTGCCCAAGCTCTCGACGACCCTTCCATCCAAACCGTTGCCGGCATTGATCTAAATCACGGCGACATTGCCGGGTATCTTCCTGAAGAGCTTGGATCGCTATCTGATATCGCGTTGTTTCACGTAAACTCCAATCGATTTTGCGGCAGAGTTCCAAGAAGTTTTCGGGAGTTGAAGCTTCTCTTCGAGCTCGACGTCAGCAACAACCGACTTGCAGGGAGGTTCCCTGACGTCGTCATTGATCTGCCAAACCTAAAGTATCTCGATCTTCGGTTCAATGAGTTTGAAGGAAAAGTCCCCAAAGCTCTGTTCGATAAAGATCTTGACGCCATTTTCATCAACCATAATAGATTTGCTTTCGAGCTACCTGATAATCTCGGCAACTCGCCGGTTTCTGTCATTGTTCTTGCGAATAACAAATTTCACGGATGCATGCCGGCCAGCTTGGGAAACATGTCCAAGACACTGAATGAAGTAATATTAAGGAACAATGGTCTGAGCTCGTGCTTGCCCGAGGAAATAGGAATGGCGAGGAATGTGACGGTGTTCGACGTGAGCTTCAATAATCTTATAGGTGAGCTACCGAAGACAATCGCTGGAATGGTAAGCTTGGAAGAGTTCAACGTGGGGCACAACAAGCTCAGAGGGACTGTCCCTGATAGCCTGTGTTCACTTCCGAAGCTGCAAAAGTTAAGCATAAAGAACAATTATTTCACCGGGCAGTCGCCGGCGTGTTTCGATCTGCAGAAGTTCGACGACGCCAGGAATTGCTTGCGTGATAGGTCTCATCAAAGATCCACTCTGCAATGTAAAGTCTTTTTATCCACGCCTGCTAATTGCAGTGCCTTGGAATGTAAATCCTTTGTTACATCTCCTCCGCCTCCACCTCCTCCCCCATCTCCTCCTCCGCCTTCACCGCCTCCACCATCTCCTCCCCCGCCTTCACCGCCCCCACCATCTCCTCCCCCGCCTTCACCGCCGCCACCATCTCCTCCTCCGCCGTCTCCATCTCCTCCGCCGCCGTCTCCATCTCCTCCCCCGCCTTCACCCCCATCTCCACCACCGCCTTCACCACCTCTTTCATGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCTCACCACCACCACCAATATATTGCATTTGTTATCCATCACCACCTCCTCCCTTACTCCACCCTCCACCAAGTCCTTACTGCAATCCACCTCCACCTTATATCCCTTATCCATCTCCAACTCCTCCCCCCATCTTTTATTCACCACCTCCGTATCTCCCACCGTGTATAG 1542 50.58 MKKNIHFLLFSTLVLLFSLANSQQQPVFDFHDAEIEVPSSLVFENPRIKKAYIALQAWKQAIVSDPFNLTSNWVGSDVCNYTGVFCAQALDDPSIQTVAGIDLNHGDIAGYLPEELGSLSDIALFHVNSNRFCGRVPRSFRELKLLFELDVSNNRLAGRFPDVVIDLPNLKYLDLRFNEFEGKVPKALFDKDLDAIFINHNRFAFELPDNLGNSPVSVIVLANNKFHGCMPASLGNMSKTLNEVILRNNGLSSCLPEEIGMARNVTVFDVSFNNLIGELPKTIAGMVSLEEFNVGHNKLRGTVPDSLCSLPKLQKLSIKNNYFTGQSPACFDLQKFDDARNCLRDRSHQRSTLQCKVFLSTPANCSALECKSFVTSPPPPPPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPSPPPPSPSPPPPSPPSPPPPSPPLSCPPPPPPPPPPPHHHHQYIAFVIHHHLLPYSTLHQVLTAIHLHLISLIHLQLLPPSFIHHLRISHRV 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 481208 482749 + Bma018501.1 Bma04g00050 80419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00050 513 Gene3D Ribonuclease Inhibitor 216 369 IPR032675 -
Bma04g00050 513 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 4 32 462 - -
Bma04g00050 513 Pfam Leucine Rich Repeat 169 187 IPR001611 GO:0005515
Bma04g00050 513 Pfam Leucine rich repeat 263 322 IPR001611 GO:0005515
Bma04g00050 513 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 32 462 - -
Bma04g00050 513 PRINTS Proline rich extensin signature 414 439 - -
Bma04g00050 513 PRINTS Proline rich extensin signature 378 394 - -
Bma04g00050 513 PRINTS Proline rich extensin signature 396 413 - -
Bma04g00050 513 SUPERFAMILY L domain-like 52 334 - -
Bma04g00050 513 Gene3D Ribonuclease Inhibitor 52 214 IPR032675 -
Bma04g00050 513 Pfam Leucine rich repeat N-terminal domain 54 86 IPR013210 -
Bma04g00050 513 MobiDBLite consensus disorder prediction 374 458 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00050 Bma-Chr4:481208 Bma07g00478 Bma-Chr7:5791624 1.31E-165 dispersed
Bma04g00050 Bma-Chr4:481208 Bma01g01776 Bma-Chr1:60490675 8.55E-166 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00050 - - qlo:115970762 537.339