Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00050 ATGAAGAAAAATATTCACTTTCTCCTCTTTTCCACTCTAGTTTTGCTATTTTCTCTGGCCAATTCTCAACAACAGCCTGTTTTTGATTTCCACGATGCGGAAATCGAGGTGCCGTCCTCGCTAGTCTTCGAAAATCCAAGAATCAAGAAGGCTTATATTGCCCTCCAAGCATGGAAGCAAGCCATCGTCTCCGATCCCTTCAACCTGACCTCCAACTGGGTGGGATCCGACGTCTGCAACTACACAGGGGTTTTCTGTGCCCAAGCTCTCGACGACCCTTCCATCCAAACCGTTGCCGGCATTGATCTAAATCACGGCGACATTGCCGGGTATCTTCCTGAAGAGCTTGGATCGCTATCTGATATCGCGTTGTTTCACGTAAACTCCAATCGATTTTGCGGCAGAGTTCCAAGAAGTTTTCGGGAGTTGAAGCTTCTCTTCGAGCTCGACGTCAGCAACAACCGACTTGCAGGGAGGTTCCCTGACGTCGTCATTGATCTGCCAAACCTAAAGTATCTCGATCTTCGGTTCAATGAGTTTGAAGGAAAAGTCCCCAAAGCTCTGTTCGATAAAGATCTTGACGCCATTTTCATCAACCATAATAGATTTGCTTTCGAGCTACCTGATAATCTCGGCAACTCGCCGGTTTCTGTCATTGTTCTTGCGAATAACAAATTTCACGGATGCATGCCGGCCAGCTTGGGAAACATGTCCAAGACACTGAATGAAGTAATATTAAGGAACAATGGTCTGAGCTCGTGCTTGCCCGAGGAAATAGGAATGGCGAGGAATGTGACGGTGTTCGACGTGAGCTTCAATAATCTTATAGGTGAGCTACCGAAGACAATCGCTGGAATGGTAAGCTTGGAAGAGTTCAACGTGGGGCACAACAAGCTCAGAGGGACTGTCCCTGATAGCCTGTGTTCACTTCCGAAGCTGCAAAAGTTAAGCATAAAGAACAATTATTTCACCGGGCAGTCGCCGGCGTGTTTCGATCTGCAGAAGTTCGACGACGCCAGGAATTGCTTGCGTGATAGGTCTCATCAAAGATCCACTCTGCAATGTAAAGTCTTTTTATCCACGCCTGCTAATTGCAGTGCCTTGGAATGTAAATCCTTTGTTACATCTCCTCCGCCTCCACCTCCTCCCCCATCTCCTCCTCCGCCTTCACCGCCTCCACCATCTCCTCCCCCGCCTTCACCGCCCCCACCATCTCCTCCCCCGCCTTCACCGCCGCCACCATCTCCTCCTCCGCCGTCTCCATCTCCTCCGCCGCCGTCTCCATCTCCTCCCCCGCCTTCACCCCCATCTCCACCACCGCCTTCACCACCTCTTTCATGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCTCACCACCACCACCAATATATTGCATTTGTTATCCATCACCACCTCCTCCCTTACTCCACCCTCCACCAAGTCCTTACTGCAATCCACCTCCACCTTATATCCCTTATCCATCTCCAACTCCTCCCCCCATCTTTTATTCACCACCTCCGTATCTCCCACCGTGTATAG 1542 50.58 MKKNIHFLLFSTLVLLFSLANSQQQPVFDFHDAEIEVPSSLVFENPRIKKAYIALQAWKQAIVSDPFNLTSNWVGSDVCNYTGVFCAQALDDPSIQTVAGIDLNHGDIAGYLPEELGSLSDIALFHVNSNRFCGRVPRSFRELKLLFELDVSNNRLAGRFPDVVIDLPNLKYLDLRFNEFEGKVPKALFDKDLDAIFINHNRFAFELPDNLGNSPVSVIVLANNKFHGCMPASLGNMSKTLNEVILRNNGLSSCLPEEIGMARNVTVFDVSFNNLIGELPKTIAGMVSLEEFNVGHNKLRGTVPDSLCSLPKLQKLSIKNNYFTGQSPACFDLQKFDDARNCLRDRSHQRSTLQCKVFLSTPANCSALECKSFVTSPPPPPPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPSPPPPSPSPPPPSPPSPPPPSPPLSCPPPPPPPPPPPHHHHQYIAFVIHHHLLPYSTLHQVLTAIHLHLISLIHLQLLPPSFIHHLRISHRV 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 481208 482749 + Bma018501.1 Bma04g00050 80419

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00050 513 Gene3D Ribonuclease Inhibitor 216 369 IPR032675 -
Bma04g00050 513 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 4 32 462 - -
Bma04g00050 513 Pfam Leucine Rich Repeat 169 187 IPR001611 GO:0005515
Bma04g00050 513 Pfam Leucine rich repeat 263 322 IPR001611 GO:0005515
Bma04g00050 513 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 32 462 - -
Bma04g00050 513 PRINTS Proline rich extensin signature 414 439 - -
Bma04g00050 513 PRINTS Proline rich extensin signature 378 394 - -
Bma04g00050 513 PRINTS Proline rich extensin signature 396 413 - -
Bma04g00050 513 SUPERFAMILY L domain-like 52 334 - -
Bma04g00050 513 Gene3D Ribonuclease Inhibitor 52 214 IPR032675 -
Bma04g00050 513 Pfam Leucine rich repeat N-terminal domain 54 86 IPR013210 -
Bma04g00050 513 MobiDBLite consensus disorder prediction 374 458 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00050 - - - qlo:115970762 537.339
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00050 Bma-Chr4:481208 Bma07g00478 Bma-Chr7:5791624 1.31E-165 dispersed
Bma04g00050 Bma-Chr4:481208 Bma01g01776 Bma-Chr1:60490675 8.55E-166 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma01g01776 . 66 232 Leucine-rich Repeat extension Gene Families AT1G62440 70.1 2.9e-42 170.6
Bma07g00478 . 65 231 Leucine-rich Repeat extension Gene Families AT1G62440 70.1 3.8e-42 170.2
Bma04g00050 . 7 379 Leucine-rich Repeat extension Gene Families AT1G62440 53.3 3.6e-40 163.7
Bma01g01776 . 25 411 Leucine-rich Repeat extension Gene Families AT4G13340 69.1 2.0e-59 227.6
Bma07g00478 . 24 410 Leucine-rich Repeat extension Gene Families AT4G13340 69.1 2.0e-59 227.6
Bma04g00050 . 23 379 Leucine-rich Repeat extension Gene Families AT4G13340 61.1 3.7e-42 170.2
Bma01g01776 . 35 419 Leucine-rich Repeat extension Gene Families AT3G24480 72.5 4.1e-74 275.8
Bma07g00478 . 34 418 Leucine-rich Repeat extension Gene Families AT3G24480 72.5 5.3e-74 275.4
Bma04g00050 . 28 380 Leucine-rich Repeat extension Gene Families AT3G24480 57.6 4.1e-42 169.5
Bma04g00050 . 45 378 Leucine-rich Repeat extension Gene Families AT3G22800 61.8 4.3e-41 166.0
Bma04g00050 . 8 379 Leucine-rich Repeat extension Gene Families AT5G25550 63.3 1.5e-51 200.7
Bma01g01776 . 52 413 Leucine-rich Repeat extension Gene Families AT5G25550 59.2 3.2e-38 156.4
Bma07g00478 . 51 412 Leucine-rich Repeat extension Gene Families AT5G25550 59.2 3.2e-38 156.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92