Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00059 ATGTCAGGATCAGCAATGGTGGGAGATGCGAGCTCGTGGGCTCGCGCAATCGTCAAGATCTCTCCCTATACCTTCTCTGCCGTTGGAATTGCCGTCGCTATCGGTGTTTCCGTTCTCGGCGCCGCCTGGGGGATTTATATAACTGGAAGTAGTTTGATTGGTGCTGCGATCAAAGCTCCACGTATTACTTCGAAGAATTTAATCAGTGTGATATTTTGCGAAGCAGTGGCCATATATGGTGTTATCGTCGCCATCATCTTACAAACAAAGTTAGAAAGTGTTCCAACATCACAAATGTATGCGCCAGAGGCTCTCAGAGCAGGATATGCTATTTTTGCCTCTGGACTTATTGTGGGTTTTGCTAACCTTGTCTGCGGGTTGTGTGTAGGAATAATTGGAAGCAGTTGTGCATTATCTGACGCCCAAAACTCATCTCTTTTTGTGAAGATTCTTGTGATTGAAATCTTTGGTAGTGCCCTTGGGCTATTTGGTGTGATTGTAGGAATCATAATGTCGGCTCAAGCTTCTTGGCCGGCAAGGATTCCATGA 549 45.72 MSGSAMVGDASSWARAIVKISPYTFSAVGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPTSQMYAPEALRAGYAIFASGLIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQASWPARIP 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 546526 547817 + Bma018510.2 Bma04g00059 80428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00059 182 SUPERFAMILY F1F0 ATP synthase subunit C 105 172 IPR035921 -
Bma04g00059 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Bma04g00059 182 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078|GO:0033177|GO:1902600
Bma04g00059 182 Pfam ATP synthase subunit C 29 87 IPR002379 GO:0015078|GO:0033177|GO:1902600
Bma04g00059 182 Gene3D - 23 177 IPR035921 -
Bma04g00059 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bma04g00059 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bma04g00059 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bma04g00059 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bma04g00059 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Bma04g00059 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 179 - -
Bma04g00059 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Bma04g00059 182 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 4 179 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02155 Bma04g00059 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02159 Bma-Chr1:78370643 Bma04g00059 Bma-Chr4:546526 4.68E-121 dispersed
Bma04g00059 Bma-Chr4:546526 Bma05g00418 Bma-Chr5:13219011 5.11E-23 dispersed
Bma01g02155 Bma-Chr1:78151121 Bma04g00059 Bma-Chr4:546526 4.68E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00059 K03661 - rcu:8284846 315.079