Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00060 GCTTTACCGAATCAGCAGACTGTAGACTACCCCAGCTTCAAGCTTGTGATTGTTGGCGATGGTGGAACTGGGAAAACTACATTTGTGAAAAGGCATCTTACTGGCGAGTTTGAGAAGAAATATGAACCAACCATCGGTGTTGAAGTTCATCCCCTGGATTTTTTCACAAATTGCGGAAAAATTAGATTCTATTGCTGGGACACTGCTGGTCAGGAGAAATTTGGTGGCCTAAGGGATGGATATTACATCCATGGGCAGTGTGCAATTATCATGTTTGATGTTACTGCACGGTTGACATACAAGAATGTTCCAACGTGGCATCGAGATCTTTGCAGGGATGCTAATCTTCATTTTGTGGAATCTCCGGCTTTGGCTCCTCCAGAAGTTCAGATCGACTTGGCTGCTCAGCATCAGCACGAGGCGGAACTTGCTGCAGCTGCTAGTCAGCCTCTTCCAGATGACGATGATGACGCTTTTGATTAA 483 45.55 ALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRDANLHFVESPALAPPEVQIDLAAQHQHEAELAAAASQPLPDDDDDAFD 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 550875 552966 + Bma018511.1 Bma04g00060 80429

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00060 160 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 73 91 IPR002041 GO:0003924|GO:0005525|GO:0006913
Bma04g00060 160 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 93 114 IPR002041 GO:0003924|GO:0005525|GO:0006913
Bma04g00060 160 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 26 40 IPR002041 GO:0003924|GO:0005525|GO:0006913
Bma04g00060 160 ProSiteProfiles small GTPase Rab1 family profile. 7 160 - -
Bma04g00060 160 SMART rab_sub_5 13 141 - -
Bma04g00060 160 PANTHER RAN GTPASE 113 160 IPR002041 GO:0003924|GO:0005525|GO:0006913
Bma04g00060 160 ProSiteProfiles small GTPase Ran family profile. 6 160 IPR002041 GO:0003924|GO:0005525|GO:0006913
Bma04g00060 160 PANTHER GTP-BINDING NUCLEAR PROTEIN 113 160 - -
Bma04g00060 160 SMART ran_sub_2 18 159 - -
Bma04g00060 160 Pfam Ras family 14 115 IPR001806 GO:0003924|GO:0005525
Bma04g00060 160 PANTHER RAN GTPASE 1 112 IPR002041 GO:0003924|GO:0005525|GO:0006913
Bma04g00060 160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 114 IPR027417 -
Bma04g00060 160 PANTHER GTP-BINDING NUCLEAR PROTEIN 1 112 - -
Bma04g00060 160 Gene3D - 4 159 IPR027417 -
Bma04g00060 160 SMART rho_sub_3 15 150 IPR001806 GO:0003924|GO:0005525
Bma04g00060 160 SMART ras_sub_4 10 144 - -
Bma04g00060 160 TIGRFAM small_GTP: small GTP-binding protein domain 13 111 IPR005225 GO:0005525
Bma04g00060 160 CDD Ran 13 112 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00060 K07936 RAN; GTP-binding nuclear protein Ran - han:110923896 245.743
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00060 Bma-Chr4:550875 Bma06g00065 Bma-Chr6:1046161 4.18E-19 dispersed
Bma04g00060 Bma-Chr4:550875 Bma04g00061 Bma-Chr4:553760 5.73E-92 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g439 . Blo12g01085 . Bda03g00062 . Bpe02g00576 Bma04g00060 . . Cmo12g00273 . . . . Sed08g0705 . . Bhi04g01002 Tan02g2699 Cmetu02g1205 . Hepe10g0272 . Lcy13g1760 . . . . . . . Cone4ag1810 Cone7ag1720 Cone17ag1037 Cone20ag0661 . . . Cme03g01644 . . . . . . . . . . . . Cma12g00321 . . . . . . . . . . . . . . . . . . . . Chy03g01146 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021525 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00060 Bma_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0