Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00061 GCTTTATACAATCAGCAGACTGTAGATTACCCCAGCTTCAAGCTTGTTATTGTTGGCGATGGTGGAACTGGGAAAACAACTTTTGTGAAAAGACATCTTACTGGCGAGTTTGAGAAGAAATATGAACCAACTATTGGCGTGGAGGTTCATCCCTTAGATTTTTTCACCAATTGTGGAAAAATTCGATTCTATTGCTGGGACACTGCTGGCCAGGAGAAGTTTGGTGGTCTAAGGGATGGATACTACATTCATGGGCAGTGTGCAATCATCATGTTTGATGTGACTGCACGATTGACATACAAGAATGTTCCAACTTGGTACCGGGATCTTTGCAGGGTTTGTGAAAACATCCCAATTGTTCTGTGTGGAAACAAGGTTGATGTGAAGAACAGGCAAGTGAAAGCAAAACAGGTGACCTTCCACCGCAAGAAGAATTTGCAGTACTACGAGATTTCTGCAAAGAGCAACTATAACTTCGAAAAACCATTTCTCTATCTCACCAGAAAACTTGCAGGGGATGCTCACCTGCATTTTGTGGAATCTCCGGCGTTGGCTCCTCCGGAAGTGCATATTGACTTGGATGCTCAGAAACAGCACGAGGCAGAACTTGCTGATGCTATTAACCAGCCCCTTCCAGATGAGGATGATGATGATGATGCCTTCGGATAA 669 43.95 ALYNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWYRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLTRKLAGDAHLHFVESPALAPPEVHIDLDAQKQHEAELADAINQPLPDEDDDDDAFG 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 553760 555459 + Bma018512.1 Bma04g00061 80430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00061 222 ProSiteProfiles small GTPase Ran family profile. 6 170 IPR002041 GO:0003924|GO:0005525|GO:0006913
Bma04g00061 222 ProSiteProfiles small GTPase Ras family profile. 4 208 IPR001806 GO:0003924|GO:0005525
Bma04g00061 222 SMART ran_sub_2 18 219 - -
Bma04g00061 222 TIGRFAM small_GTP: small GTP-binding protein domain 13 163 IPR005225 GO:0005525
Bma04g00061 222 PANTHER GTP-BINDING NUCLEAR PROTEIN 1 217 - -
Bma04g00061 222 SMART rab_sub_5 13 173 - -
Bma04g00061 222 SMART rho_sub_3 15 169 IPR001806 GO:0003924|GO:0005525
Bma04g00061 222 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 129 147 IPR002041 GO:0003924|GO:0005525|GO:0006913
Bma04g00061 222 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 167 189 IPR002041 GO:0003924|GO:0005525|GO:0006913
Bma04g00061 222 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 26 40 IPR002041 GO:0003924|GO:0005525|GO:0006913
Bma04g00061 222 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 93 114 IPR002041 GO:0003924|GO:0005525|GO:0006913
Bma04g00061 222 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 73 91 IPR002041 GO:0003924|GO:0005525|GO:0006913
Bma04g00061 222 SMART ras_sub_4 10 173 - -
Bma04g00061 222 Pfam Ras family 14 170 IPR001806 GO:0003924|GO:0005525
Bma04g00061 222 Gene3D - 3 218 IPR027417 -
Bma04g00061 222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 181 IPR027417 -
Bma04g00061 222 MobiDBLite consensus disorder prediction 202 222 - -
Bma04g00061 222 CDD Ran 13 178 - -
Bma04g00061 222 ProSiteProfiles small GTPase Rab1 family profile. 7 208 - -
Bma04g00061 222 PANTHER RAN GTPASE 1 217 IPR002041 GO:0003924|GO:0005525|GO:0006913
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00061 K07936 RAN; GTP-binding nuclear protein Ran - han:110923896 426.787
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00061 Bma-Chr4:553760 Bma06g00065 Bma-Chr6:1046161 2.48E-28 dispersed
Bma04g00060 Bma-Chr4:550875 Bma04g00061 Bma-Chr4:553760 5.73E-92 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g440 Blo01g01374 Blo12g01084 Bda01g00730 Bda03g00063 . . Bma04g00061 . Cmo05g00415 . . Cma05g00404 . Car12g00303 . Cpe07g00282 . . . . . . . . . . . . . . . . . Cone17ag1036 . . . . . . . . . . Bpe04g00049 . . . . . . . . Car05g00338 Cpe11g00344 . . . . . . . . Cla08g01310 Cam08g1770 Cec08g1351 Cco08g1472 Clacu08g1466 . Cre08g1253 Lsi08g01174 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000590 3 3 3 1 2 4 3 4 4 1 4 4 3 4 4 6 4 5 3 4 4 2 3 3 1 3 4 6 5 4 104
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00061 Bma_Chr04 FPKM 2.413538 2.779381 2.896121 2.972714 2.885188 2.167321 2.583745 2.474176 2.991138 2.726383