Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00062 ATGTGGTTCAAGAAAGGTAGTAAAGTGGAGGTCTTGCGCGATAAATCTTCAGGAGCATGGTATAGTGCTGAGATTATCTCCGGCAGTGGTCGCACATATAGTGTTCGGTATGACTATATTTCCATCATTAAAGGTGAGGGAGTTGTGGAGAGGGTATCAAGGAAGGCTATCAGGCCTATTCCCCCTGCAGAAAGTTTGAATGATTTGGTGGCTGGAGATCTCACTGAGGCTTTCACTTTTGGCGCTTGGAAGATAGCTGTGATTTTGAAGGTCTTGAGTGGGGACTGTTATTTAGTTAGGCTAGTTGGGTCTCTTGAAGAATTCTGTGCCCACAGATCAAAAATCAGGGTGCGTCAATCTTGGCAGAATGAAAAATGGTTCGTGACTGGAAAGATGTACACGAGGCACCATTATATTGACATGAAAAGTAAACTTCAAGAGGGAATTGGTATGTCTTTTCAGGAAAGAATGGGTTTGGAAGTTTCTAGTTTGGCCTCACCAAGAAAATTAAAAAGAGTGCTGTCTTGTTCATCTCGCATCAGAACATATCCCAAAAAAATGAAACGTGTGAAGAAAGAGGGCACTCGGCAGCGGGAGCAATATATTTCAGGATCCTCATTTCCGTTATCTGATAAGGTAGATGCTGGTGATGTATTACTAGAAAATCTGGGTGCAAAATACTTGAAACTTTCTTTTAACAACGAAACTGCTGATTATCGGGAAACAGGGAAGAAAGATACTTATGGCGGTATTTCTTGTTTTCCTAAGAGAAACAGAAAAGCTGCTGATTATGATAGTGATATATGCTCTGTTGGTAGTTGTAGTGTTATTGATAACAGTTCAGATCCAAGGTTGCATGGTTGTATTTCAGCAGGAACTAGTATGGATGCAGTTGAACTTCATAGTGAAGCAGAAAGCTCTCATGGATGTGCAAATGACGAAGAAAGTTCTTATGTCCCCTCAAATGGGGATGAAAGAGAGAGAATACATAGATTAGAACTGAATGCTTATCACAGTATTTTAGTTGCACTACATGCCAACGGGCCGTTAAGTTGGGAACAAGAAGCTCTATTAACAAATCTCCGGCCAAAGTTGGGGGCTTGCATGCCTTGCTTCTATTGGTCTGCAGATGACAATGACAAGGAAATCTGCTTCTAA 1158 41.28 MWFKKGSKVEVLRDKSSGAWYSAEIISGSGRTYSVRYDYISIIKGEGVVERVSRKAIRPIPPAESLNDLVAGDLTEAFTFGAWKIAVILKVLSGDCYLVRLVGSLEEFCAHRSKIRVRQSWQNEKWFVTGKMYTRHHYIDMKSKLQEGIGMSFQERMGLEVSSLASPRKLKRVLSCSSRIRTYPKKMKRVKKEGTRQREQYISGSSFPLSDKVDAGDVLLENLGAKYLKLSFNNETADYRETGKKDTYGGISCFPKRNRKAADYDSDICSVGSCSVIDNSSDPRLHGCISAGTSMDAVELHSEAESSHGCANDEESSYVPSNGDERERIHRLELNAYHSILVALHANGPLSWEQEALLTNLRPKLGACMPCFYWSADDNDKEICF 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 557251 559259 - Bma018513.1 Bma04g00062 80431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00062 385 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 1 242 - -
Bma04g00062 385 ProSiteProfiles EMSY N-terminal (ENT) domain profile. 325 385 IPR005491 -
Bma04g00062 385 Pfam ENT domain 327 365 IPR005491 -
Bma04g00062 385 PANTHER JHL25H03.10-LIKE PROTEIN 1 242 - -
Bma04g00062 385 SUPERFAMILY ENT-like 319 365 IPR036142 -
Bma04g00062 385 SMART ENT_2 325 380 IPR005491 -
Bma04g00062 385 MobiDBLite consensus disorder prediction 305 324 - -
Bma04g00062 385 Gene3D ENT domain 321 367 IPR036142 -
Bma04g00062 385 SMART agenet_At_2 1 65 IPR014002 -
Bma04g00062 385 SMART agenet_At_2 67 123 IPR014002 -
Bma04g00062 385 CDD TUDOR 15 59 IPR002999 -
Bma04g00062 385 Pfam Agenet domain 6 62 IPR008395 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00062 - - - zju:107421236 283.108
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00062 Bma-Chr4:557251 Bma07g00453 Bma-Chr7:5486474 3.55E-11 dispersed
Bma04g00062 Bma-Chr4:557251 Bma11g00480 Bma-Chr11:5964250 1.49E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g441 . Blo12g01083 Bda01g00731 Bda03g00064 . Bpe02g00575 Bma04g00062 . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1809 Cone7ag1719 . . . . . . . . . . . Bpe04g00050 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000990 2 11 1 3 2 2 4 1 2 2 1 2 4 2 2 4 2 2 3 2 2 2 2 1 2 2 2 10 4 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00062 Bma_Chr04 FPKM 91.513008 97.861565 107.635185 98.924309 40.409172 46.636589 40.844028 60.730217 62.481026 62.358875