Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00063 ATGGAAGCGAATGCAGGATTGGTTGCTGGCTCTTACAAGAGAAATGAGATTGTTCGGATTCGTCACGATTCTGACGGCGGGCCAAAACCTTTGAAGCATTTGAACGGCCAAATTTGCCAGATATGTGGCGATACTGTTGGACTCACAGCCTCAGGTGATGTATTTGTTGCATGCAATGAATGTGCCTTCCCTGTTTGCCGGCCTTGTTACGAGTATGAGAGGAAAGATGGGAACCAATCTTGCCCCCAGTGCAAGACTAGATACAAAAGGCACAAAGGAAGTCCGAGAGTTGACGGAGATGACGATGAGGATGATGTTGATGATATTGAAAATGAGTTCAATTATGGGCAAGGAAATAGCAAGGCAAGACGCCAGTGGCTTGGAAAAGATGCTGATGTGTCATCATCTGCTAGACACGAGTCCCGACAACCAATACCTCTTCTAACCAACGGGCAACCTATCTCTGGTGAAATTCCTGCTACACCAGACAACCAATCTGTTCGGACAACGTCAGGGCCTTTAGGTCCTTCTGAAAAAAGTGTTCATTCACTTCATTACACTGATCCACGTCAGCCAGTTCCTGTAAGGATTGTCGATCCATCAAAAGACTTGAATGCTTATGGCCTTGGAAATGTTGACTGGAAGGAAAGAGTTGAAGGCTGGAAGCTCAAACAGGAGAAAACCATTATGCAGGTGACAAGTAGATACACTGAGGGGAAGGGCGATATGGAAGGCACAGGGTCTAATGGAGATGAACTGCAAATGGCTGACGATGGTAGACAACCTTTGAGTCGTGTGGTTCCCATTTCTTCTTCTCACTTGACCCCCTATCGGGTTGTGATCATACTTCGACTTATTATTTTGGGATTCTTCTTACAATACCGAGTAACGCACCCTGTGAAGGATGCATATCCATTGTGGCTGACTTCAGTTATTTGTGAGATTTGGTTTGCTTTATCATGGCTATTGGATCAGTTTCCTAAATGGTCTCCCATCAATCGCGAAACCTACATCGACAGGCTTGCGTTGAGATATGATCGTGAAGGAGAGCCATCGCAGCTTGCTCCTGTAGATGTTTTTGTGAGTACAGTGGATCCACTGAAAGAGCCTCCTCTCATTACTGCGAATACTGTTCTTTCCATACTTGCTGTGGATTACCCTGTCGACAAAGTCTCTTGCTATGTCTCTGATGATGGTTCGGCTATGCTGACCTTTGAAGCCCTCACTGAAACTGCAGAATTTGCAAGAAAGTGGGTTCCCTTCTGCAAAAAACATAACATTGAGCCAAGGGCCCCTGAATTTTATTTTGCTCAAAAAATAGACTATTTGAAGGATAAGATTCAGCCCTCATTTGTGAAAGAACGTAGAGCAATGAAGAGGGAGTATGAAGAATTCAAAGTTCGGATAAATGCACTGGTGGCCAAAGCACAGAAGATGCCTGAAGAAGGCTGGACGATGCAGGATGGTACTCCATGGCCTGGAAATAATCCAAGAGATCATCCAGGAATGATCCAGGTTTTTCTAGGACATAGTGGAGGACTTGACACGGATGGAAATGAGCTCCCTCGGCTTGTTTACGTTTCTAGAGAAAAAAGACCAGGCTTCCAGCATCATAAGAAAGCCGGAGCAATGAATGCATTGATTCGAGTTTCAGCTGTCCTTACCAATGGAGCATACCTCCTGAATGTTGATTGTGATCACTACTTTAACAACAGCAAAGCTCTCAAGGAAGCTATGTGTTTCATGATGGATCCTGCTTATGGAAAGAAGACATGCTACGTACAGTTCCCACAGCGTTTTGATGGCATTGATTTGCACGATCGATATGCCAATCGAAACATTGTCTTCTTCGATATCAACTTGAAGGGGCTAGATGGCATCCAGGGCCCCGTTTATGTCGGAACTGGTTGTTGCTTCAATAGGCAAGCTTTATATGGGTACGATCCAGTTTTGACCGAGAAAGATTTGGAACCTAATATTATTATTAAGAGTTGCTGCGGCCAAAGAAAGAAGGGTAAGATTGGCAATAAGAAGTACGTTGACAAGAAGAGGGCCTTGAAAAGAACTGAATCTACTGTCCCTATCTTCAATATGGAAGACATTGAAGAGGGTGTTGAAGCATATGACGATGAGAGATCGCTGCTTATGTCTCAGAAGAGCTTAGAGAAGCGTTTCGGTCAATCTCCAGTTTTTATTGCAGCAACTTTCATGGAACAGGGAGGTATTCCACCTTCAACTAATCCTACAACTCTTCTAAAGGAAGCCATTCATGTTATTAGCTGTGGATATGAAGACAAGACAGATTGGGGCAAAGAGATCGGATGGATCTATGGCTCTGTTACAGAAGATATCTTAACTGGGTTCAAGATGCATGCCCGTGGTTGGATTTCAATCTATTGCATGCCTCCTCGGCCAGCATTCAAGGGGTCTGCTCCCATCAATCTTTCCGATCGGTTGAATCAGGTGCTTCGATGGGCTCTGGGTTCGATTGAGATTTTACTAAGCAGGCATTGTCCCATCTGGTATGGCTACAATGGGAGACTAAAGCTTTTGGAAAGAATAGCATACATCAATACTATTGTCTACCCACTTACTTCCATCCCTCTGTTAGCTTATTGTATTCTTCCTGCATTCTGTCTTCTGACCGGAAAATTCATCATTCCAGAGATAAGCAACTTTGCTAGCATGTGGTTCATCCTCCTTTTCGTGTCCATCTTTGCCACTGGAATCCTCGAACTTAGATGGAGTGGAGTCAGCATCGAAGACTGGTGGAGGAATGAACAATTCTGGGTCATTGGGGGTACTTCAGCTCATTTATTTGCTGTCTTCCAAGGGCTCTTGAAAGTGCTCGCGGGAATTGACACCAACTTCACTGTCACTTCCAAGGCATCCGATGAAGATGGCGAATTCTCTGAGCTTTACGAGTTCAAGTGGACATCTCTTCTCATCCCTCCCACCACCGTAATTATCGTGAATATGGTGGGTATTGTGGCCGGAGTTTCCTATGCCATTAACAGCGGGTACCAGTCATGGGGTCCTCTCTTTGGCAAGCTCTTCTTCGCATTATGGGTCATTGTCCATTTGTACCCTTTCCTCAAAGGTTTGCTTGGTCGGCAAAATCGCACCCCTACGATTGTCATCGTGTGGTCCATTCTCCTTGCTTCTATATTCTCGTTGCTAGTGGGTGCGGATTGA 3195 44.85 MEANAGLVAGSYKRNEIVRIRHDSDGGPKPLKHLNGQICQICGDTVGLTASGDVFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPRVDGDDDEDDVDDIENEFNYGQGNSKARRQWLGKDADVSSSARHESRQPIPLLTNGQPISGEIPATPDNQSVRTTSGPLGPSEKSVHSLHYTDPRQPVPVRIVDPSKDLNAYGLGNVDWKERVEGWKLKQEKTIMQVTSRYTEGKGDMEGTGSNGDELQMADDGRQPLSRVVPISSSHLTPYRVVIILRLIILGFFLQYRVTHPVKDAYPLWLTSVICEIWFALSWLLDQFPKWSPINRETYIDRLALRYDREGEPSQLAPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALTETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEKDLEPNIIIKSCCGQRKKGKIGNKKYVDKKRALKRTESTVPIFNMEDIEEGVEAYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPTTLLKEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERIAYINTIVYPLTSIPLLAYCILPAFCLLTGKFIIPEISNFASMWFILLFVSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGEFSELYEFKWTSLLIPPTTVIIVNMVGIVAGVSYAINSGYQSWGPLFGKLFFALWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLVGAD 1064
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 561763 566754 + Bma018514.1 Bma04g00063 80432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00063 1064 Coils Coil 455 475 - -
Bma04g00063 1064 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Bma04g00063 1064 Pfam Cellulose synthase 357 1060 IPR005150 GO:0016020|GO:0016760|GO:0030244
Bma04g00063 1064 MobiDBLite consensus disorder prediction 75 194 - -
Bma04g00063 1064 PANTHER CELLULOSE SYNTHASE 20 1060 - -
Bma04g00063 1064 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Bma04g00063 1064 SUPERFAMILY RING/U-box 22 111 - -
Bma04g00063 1064 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Bma04g00063 1064 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 20 1060 - -
Bma04g00063 1064 Pfam Zinc-binding RING-finger 29 106 IPR027934 -
Bma04g00063 1064 SUPERFAMILY Nucleotide-diphospho-sugar transferases 371 900 IPR029044 -
Bma04g00063 1064 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 515 652 IPR029044 -
Bma04g00063 1064 MobiDBLite consensus disorder prediction 138 177 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01040 Bma-Chr3:12145522 Bma04g00063 Bma-Chr4:561763 0 dispersed
Bma04g00063 Bma-Chr4:561763 Bma05g01323 Bma-Chr5:52786012 0 dispersed
Bma04g00063 Bma-Chr4:561763 Bma06g00955 Bma-Chr6:45847014 0 transposed
Bma04g00063 Bma-Chr4:561763 Bma06g00533 Bma-Chr6:27321590 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00063 K10999 - vvi:100254408 2076.21