Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00066 ATGGTACAATCGAGGAAGTTCAGAGGTGTCAGGCAGCGGCAGTGGGGCTCCTGGGTGTCAGAAATTCGCCACCCGTTACTGAAGAGAAGGGTATGGCTGGGGACGTTTGAGACAGCAGAGGCGGCTGCTCGGGCATATGACCAAGCAGCCATATTGATGAACGGCCAAAATGCCAAGACCAATTTTCCTAACTCAAACAATAAAGTTGAAGACTCGAAGAACGGGGATGGATCTCCATTGTCACCAAAGGAACTTTCAGAACTTCTAAGCACAAAGCTAAGAAAATGCTGCAAAGACCCATCTCCTTCTCTCACGTGCTTGAGGCTCGACAGCGATAATTCTCACATCGGAGTGTGGCAGAAGCGGGCTGGGACCCATACAGGCTCCAATTGGGTCATGAGGATCGAGCTTGGGAAGAAAAGTTCAAATCATTCAGAGATTGAGTCGCCATTATCGACCGGGGAAACGAAGAGAGGAACGATCGAAGGGGAAAACGAAATGGAGGAAGAGGATAGAACTGCAATGCAAATGATCGAGGAGTTGCTTAACTGGAACAATCCA 561 49.02 MVQSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPNSNNKVEDSKNGDGSPLSPKELSELLSTKLRKCCKDPSPSLTCLRLDSDNSHIGVWQKRAGTHTGSNWVMRIELGKKSSNHSEIESPLSTGETKRGTIEGENEMEEEDRTAMQMIEELLNWNNP 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 589462 590195 - Bma031080 Bma04g00066 80435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00066 187 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Bma04g00066 187 MobiDBLite consensus disorder prediction 140 171 - -
Bma04g00066 187 MobiDBLite consensus disorder prediction 144 158 - -
Bma04g00066 187 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 187 - -
Bma04g00066 187 MobiDBLite consensus disorder prediction 57 74 - -
Bma04g00066 187 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Bma04g00066 187 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Bma04g00066 187 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Bma04g00066 187 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Bma04g00066 187 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Bma04g00066 187 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 187 - -
Bma04g00066 187 CDD AP2 6 65 IPR001471 GO:0003700|GO:0006355
Bma04g00066 187 MobiDBLite consensus disorder prediction 57 83 - -
Bma04g00066 187 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00066 Bma-Chr4:589462 Bma06g01066 Bma-Chr6:47475190 2.14E-82 dispersed
Bma04g00066 Bma-Chr4:589462 Bma01g00360 Bma-Chr1:2966317 1.25E-82 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57104 PF00847 AP2 2.00E-12 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00066 - - mcha:111006480 266.159