Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00072 ATGAAACAGACTTTATCTGAGGCTGTCTCCTCCTCCTCCTCTGTTACTGATTTTTCCGACCAATCGCACGCCGCTTCCTTGTCGTCGTCTGAGAAAACCCAATCAATTTCCGCTGCGGCGGCTGAGGATTTGGCCATAGGGGCCCGGGATGGCGGCGGAGCTCTTGAAACTGTTAGCGTCGAGCGTCGGGGAGAGTTTTCAGCCGTTTGCCGATGGACGGTTCAGAATTTCCCAAGAATCAAAGCTAGGGCACTGTGGAGCAAGTACTTTGAGGTTGGAGGATATGATTGTCGCCTCTTGATATATCCAAAAGGCGATACTCAGGCTCTTCCGGGTTACATCTCAATCTACCTCCAAATCATGGACCCTCGCGGAACGTCCTCCTCTAAGTGGGACTGCTTTGCTAGCTATCGGTTAGCGATCGTCAATGGCATGGATGATAGCAAGACAATTCATCGGGATTCTTGGCATCGTTTCTCCACTAAAAAGAAGTCACACGGTTGGTGCGATTTCACGCCCTCTTCCACTGTATTCGATTCCAAATTGGGTTATTTGTTTAATAACGATTCGGTGTTGATTACTGCCGATATTCTTATCCTGAACGAATCCATTAATTTTACTCGCGATAACAATGAACTTCAATCATCTGCCTCTTCCGTGATGATGGCATCCTCGGTTGTTGCTGGTCCTGTGCCCGATGTATTAAGCGGAAAATTTACTTGGAAGGTGCATAATTTTAGTTTGTTCAAAGAAATGATCAAGACCCAAAAAATAATGAGTCCCGTATTTCCAGCTGGGGAATGCAATTTGAGGATTAGCGTTTATCAGAGTTCTGTGAATGGCGTTGAGTATTTGTCAATGTGTTTGGAGAGTAAGGATGCAGAAAAGACAGTCATGTTGTCTGATAGGAGTTGCTGGTGTTTATTTAGGATGTCTGTGTTGAATCAGAAGCCTGGATCAAATCACATGCACAGGGACTCTTATGGCCGATTTGCAGCAGACAATAAGAGTGGGGACAACACTAGTTTGGGTTGGAATGATTACATGAAGATGTCAGATTTTATTGGGCTAGAATCTGGATTTTTGGTAGATGATACTGCCGTATTCAGTACATCTTTTCATGTCATTAAAGAGTTCAGTAGTTTCTCAAAGAACGGTGGGTTGATTGCAGGGAGAAGTGGGAATGCTGCTAGAAAATCAGATGGGCATGTTGGAAAATTCACTTGGAGGATTGAGAACTTCACTCGATTAAAAGATATTTTGAAGAAGAGGAAGATTACAGGTCTTAGCATTAAGAGTAGAAGATTTCAGATTGGGAATAGGGATTGTCGTCTCATTGTTTATCCTCGAGGGCAGTCCCAACCACCGTGTCACCTTTCAGTATTTCTTGAAGTAACAGATTCAAGAAATACTTCCAGTGAATGGAGTTGTTTTGTGAGTCATCGGCTGTCAGTTGTTAACCAGAAAATCGAAGAGAAGTCGGTTATGAAGGAATCTCAAAATCGCTACTCCAAAGCTGCAAAAGACTGGGGTTGGCGTGAATTTGTGACTCTTACTAGTCTCTTTGATCAAGATTCTGGGTTCCTCGTTCAAGATGCTGTTATTTTCTCAGCCGAGGTCCTTATCTTAAAGGAGTCGTCTATGATGCAGGATTTTATTGATCAGGATACTCAGCTGACTGGTAGTGGTTCTCAGACAGATAAGACTGCAAAAAAAAGTGCATTTACGTGGAAGGTGGAGAACTTTCTTTCATTTAAGGAAATAATGGAGACTCGAAAGATATTTAGCAAATTCTTTCAAGCTGGTGGATGTGAGCTTCGGATTGGCGTCTACGAATCCTTTGACACAATTTGTATCTACTTGGAGAGTGATCAGTCAGTTGGTACTGATCCGGATAAAAACTTCTGGATCAGGTACAAAATGGCAGTGGTTAATCAGAAAAACCCAGCCAAAACTGTGTGGAAGGAATCTTCAATATGTACAAAAACGTGGAATAATTCTGTCTTGCAATTCATGAAGGTTTCAGATATGTTGGAGGCCGATGCTGGTTTTCTTGTTCGCGATACTGTTGTTTTTGTTTGTGAAATATTGGATTGCTGCCCATGGTTTGAGTTTTCAGATCTCGAGGTTTTGGCTTCAGAAGATGATCAGGATGCTTTGACTACCGATCCTGATGAACTCATTGATTCTGAAGATAGTGAAAGAATTAGTGGAGATGAAGAAGATATTTTTAGAAATCTTCTCTCCACAGCAGGATTTCATTTAACGTATGGCGACAATCCTTCACAGCCGCAAGTCACATTACGAGAAAAGCTTCTGATGGATGCTGGTGCTATTGCTGGTTTCCTTACTGGTCTTCGTGTATATCTTGATGATCCTGCGAAAGTAAAGCGCTTGCTTCTTCCTACAAAGCTCTCATGTAGTAATGACGGTAAGAAGGTTGCACAATCTGAGGAATCTTCTCCCAGTTTGATGAATTTGCTAATGGGGGTTAAAGTTTTACAGCAAGCAATTATTGATTTGCTTCTCGATATAATGGTCGAATGTTGCCAACCTTCGGAATTGTGTTCTGGGGACCCCTCAGATGTAATTTTGAAACCTTCTCTTGATAGCGGTGGGGCTATCAGTCCAGTGGACTGCGATAGGGAAAATGTGGCAGTAGAATCTGCACAGTTTCCTTTATTTGACAGATTGGATTCTGCTGATGGAAGTAACAGTGCATCAGCTGTACAGAGCTGTGACATGATTAGGACTGGGATGCAAAGAAAAGTTCTTCCCGGAGAGCCAATGTCTCCACCTGAAACAATTGCTGAGGGTTCCGAGAATGTCTCTCTCCGGTCAAAGACCAAGTGGCCGGAGCAGTCTGAAGAGCTCTTAGGTTTGATAGTAAATTCTTTGAGGGCCCTCGATGGAGCTGTTCCTCAAGGATGTCCAGAGCCAAGAAGAAGGCCTCAATCAGCTCAAAAGATTGCTCTTGTGCTGGATAAGGCACCAAAGCATTTGCAACCAGATTTATTTGAATTGGTTCCAAAACTGGTTGAACCTTCAGAACACCCATTAGCTGCATGTGTGCTTCTTGAACGACTTCAGAAACCAGATGCAGAACCTGGATTGCGAATACCCGTTTTTGGTGCTCTTTGTCAACTAGAATGCGGCAGTGAAGTATGGGAACAGGTTTTGTTTAAATCTTTTGAGCTTCTGGCAGACTCAAATGATGAACCTCTTGCTGCGACTATAGATTTTATATTTAAAGCTGCAGGCTCAGTGCCAACATCTCCCTGA 3282 43.05 MKQTLSEAVSSSSSVTDFSDQSHAASLSSSEKTQSISAAAAEDLAIGARDGGGALETVSVERRGEFSAVCRWTVQNFPRIKARALWSKYFEVGGYDCRLLIYPKGDTQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNGMDDSKTIHRDSWHRFSTKKKSHGWCDFTPSSTVFDSKLGYLFNNDSVLITADILILNESINFTRDNNELQSSASSVMMASSVVAGPVPDVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGVEYLSMCLESKDAEKTVMLSDRSCWCLFRMSVLNQKPGSNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFIGLESGFLVDDTAVFSTSFHVIKEFSSFSKNGGLIAGRSGNAARKSDGHVGKFTWRIENFTRLKDILKKRKITGLSIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSEWSCFVSHRLSVVNQKIEEKSVMKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDAVIFSAEVLILKESSMMQDFIDQDTQLTGSGSQTDKTAKKSAFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSVGTDPDKNFWIRYKMAVVNQKNPAKTVWKESSICTKTWNNSVLQFMKVSDMLEADAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSEDSERISGDEEDIFRNLLSTAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSCSNDGKKVAQSEESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSELCSGDPSDVILKPSLDSGGAISPVDCDRENVAVESAQFPLFDRLDSADGSNSASAVQSCDMIRTGMQRKVLPGEPMSPPETIAEGSENVSLRSKTKWPEQSEELLGLIVNSLRALDGAVPQGCPEPRRRPQSAQKIALVLDKAPKHLQPDLFELVPKLVEPSEHPLAACVLLERLQKPDAEPGLRIPVFGALCQLECGSEVWEQVLFKSFELLADSNDEPLAATIDFIFKAAGSVPTSP 1093
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 624301 628725 + Bma018522.1 Bma04g00072 80441

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00072 1093 Pfam MATH domain 75 199 IPR002083 GO:0005515
Bma04g00072 1093 Pfam MATH domain 585 692 IPR002083 GO:0005515
Bma04g00072 1093 Pfam MATH domain 435 542 IPR002083 GO:0005515
Bma04g00072 1093 MobiDBLite consensus disorder prediction 1 20 - -
Bma04g00072 1093 CDD MATH 575 696 IPR002083 GO:0005515
Bma04g00072 1093 SUPERFAMILY TRAF domain-like 405 546 - -
Bma04g00072 1093 SUPERFAMILY TRAF domain-like 573 697 - -
Bma04g00072 1093 SUPERFAMILY TRAF domain-like 67 204 - -
Bma04g00072 1093 ProSiteProfiles MATH/TRAF domain profile. 67 197 IPR002083 GO:0005515
Bma04g00072 1093 SMART math_3 409 521 IPR002083 GO:0005515
Bma04g00072 1093 SMART math_3 69 177 IPR002083 GO:0005515
Bma04g00072 1093 SMART math_3 241 354 IPR002083 GO:0005515
Bma04g00072 1093 SMART math_3 577 677 IPR002083 GO:0005515
Bma04g00072 1093 ProSiteProfiles MATH/TRAF domain profile. 572 696 IPR002083 GO:0005515
Bma04g00072 1093 ProSiteProfiles MATH/TRAF domain profile. 404 540 IPR002083 GO:0005515
Bma04g00072 1093 CDD MATH 71 197 IPR002083 GO:0005515
Bma04g00072 1093 ProSiteProfiles MATH/TRAF domain profile. 236 373 IPR002083 GO:0005515
Bma04g00072 1093 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 559 698 IPR008974 GO:0005515
Bma04g00072 1093 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 393 548 IPR008974 GO:0005515
Bma04g00072 1093 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 233 379 IPR008974 GO:0005515
Bma04g00072 1093 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 66 212 IPR008974 GO:0005515
Bma04g00072 1093 MobiDBLite consensus disorder prediction 925 949 - -
Bma04g00072 1093 CDD MATH 237 369 IPR002083 GO:0005515
Bma04g00072 1093 CDD MATH 405 540 IPR002083 GO:0005515
Bma04g00072 1093 PANTHER TRAF-LIKE FAMILY PROTEIN 34 1087 - -
Bma04g00072 1093 PANTHER TRAF-LIKE FAMILY PROTEIN 34 1087 - -
Bma04g00072 1093 SUPERFAMILY TRAF domain-like 234 379 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00072 - - - csv:101209841 1848.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00072 Bma-Chr4:624301 Bma07g00221 Bma-Chr7:2626838 2.73E-06 dispersed
Bma04g00072 Bma-Chr4:624301 Bma10g00146 Bma-Chr10:1262258 2.32E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g501 . . . Bda03g00075 . . Bma04g00072 . . . Cma01g01513 . Car09g00391 . . . Cpe06g00327 . . . . . . . Cla05g01725 Cam05g1838 Cec05g1852 Cco05g1909 Clacu05g1825 Cmu05g1709 Cre05g1840 . . Cone17ag1011 . Lsi04g02117 Csa03g04321 Chy04g00379 . . . . . . Bpe04g00061 . . Sed05g1711 Cmo01g01566 Cmo09g00453 Cma09g00443 . . . . Cpe02g00443 Bhi09g02224 Tan01g3626 Cmetu04g2170 . Hepe01g2009 Mch11g0545 . . . . . . . . . . . Cme04g00422
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007058 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00072 Bma_Chr04 FPKM 71.934875 87.129921 97.285034 91.08374 55.516159 45.769173 51.823708 7.172046 7.920834 5.913933