Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00073 ATGATCAAATCTGTCTCTGTCAATCATCAATCTCTCCACAATTGCAGGATGAAGAAGGTTTGTTGGCCCTACTTTGATCCTGAATATGATAGCCTCTCGGAGAGGATATATGGACCCACATGTAGAGTCTGCATTGACAACGAAAGCATGCAAGAATGCACCATAGTAAAGGTGGATAGTGTGAATAAGCAAGGTCTCCTCCTGGAAGTGGTTCAGGTTTTGACAGATTTGAACCTCACGATTTCAAAAAGCTACATTTCTTCTGATGCAGGATGGTTCATGGATGTTTTTCACTGTAAAGACAAGAATGGCAACAAGCTTACGGATCAGAAGATCATTGACCACATTAAGCAGGCTATAGGAACTACCAGGGGGTCAGAAAACAGGGTCATGAAGGCTAAGAACAACGCTGATAAAGAGATTTACAGACCTGAGCAGACGGCCATTGAAATGACTGGCACAGACAGGCCTGGTTTATTTTCAGAGATATCGGCAGCCTTAACCGACCTCCATTGCAACGTTGTCGAAGCTCACGCGTGGAGCCACAACGCTCGCTTAGCCTGCGTCGCTTATATTTCCGACCAATCAACGGACACCCCCATCGCCGACCCACAACGGCTGGCCACCATTGAAGACCACCTCACCACGGTGTTGAAAGCTGACGCAGCTCCGATTCCGACCACGACGCAGACCCACAGACAAGGAAAGAAAACCTCGACCACCCAGGTGGAACGGCGGCTGCACCAGCTCATGCTGTCTGTCGAGGACTTCGACGGGCCGATGAGAAAATCGGAAGTTTTGAAGGAGAGGACAGCGAAAGTAGGAAATCGATAG 834 48.56 MIKSVSVNHQSLHNCRMKKVCWPYFDPEYDSLSERIYGPTCRVCIDNESMQECTIVKVDSVNKQGLLLEVVQVLTDLNLTISKSYISSDAGWFMDVFHCKDKNGNKLTDQKIIDHIKQAIGTTRGSENRVMKAKNNADKEIYRPEQTAIEMTGTDRPGLFSEISAALTDLHCNVVEAHAWSHNARLACVAYISDQSTDTPIADPQRLATIEDHLTTVLKADAAPIPTTTQTHRQGKKTSTTQVERRLHQLMLSVEDFDGPMRKSEVLKERTAKVGNR 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 632477 633603 + Bma018523.1 Bma04g00073 80442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00073 277 CDD ACT_ACR_2 147 220 - -
Bma04g00073 277 SUPERFAMILY ACT-like 50 118 IPR045865 -
Bma04g00073 277 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR2 18 264 - -
Bma04g00073 277 CDD ACT_ACR_1 53 124 - -
Bma04g00073 277 Gene3D - 144 223 - -
Bma04g00073 277 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 18 264 IPR040217 -
Bma04g00073 277 ProSiteProfiles ACT domain profile. 148 230 IPR002912 -
Bma04g00073 277 Pfam ACT domain 148 214 IPR002912 -
Bma04g00073 277 SUPERFAMILY ACT-like 144 218 IPR045865 -
Bma04g00073 277 ProSiteProfiles ACT domain profile. 55 128 IPR002912 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00073 - - - tcc:18587767 362.459
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00073 Bma-Chr4:632477 Bma02g00288 Bma-Chr2:3327664 7.83E-76 dispersed
Bma04g00073 Bma-Chr4:632477 Bma15g00111 Bma-Chr15:1193385 2.52E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g502 . Blo12g01071 . Bda03g00076 . . Bma04g00073 . . . Cma01g01514 . . . . . . . . . . . . . Cla05g01724 Cam05g1837 Cec05g1851 Cco05g1908 Clacu05g1824 Cmu05g1708 Cre05g1839 Cone4ag1777 . . . Lsi04g02116 Csa03g04320 Chy04g00380 . . . . . . Bpe04g00062 . . Sed13g2012 Cmo01g01567 . . . . . . Cpe02g00442 Bhi09g02223 Tan01g3625 Cmetu04g2629 . Hepe01g2008 Mch11g0544 . . . . . . . . . . . Cme04g00426
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011487 0 2 0 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00073 Bma_Chr04 FPKM 27.503317 28.232077 48.916977 45.48069 28.747925 27.850302 31.147566 70.268188 73.202721 82.594421