Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00074 ATGAAAACCAGTAAAACTATTAACAATCAGTTGAATCCAATATGGAATGAACACTTTGAGTTTACTGTAGAAGATGCAGCCACTCAACACTTGACCGTGAGAATATTTGACGATGAGGGAATTCAAGCTTCTGAGTTAATCGGCTGCGTTCAATTCTCACTGAGAGACCTTGAACCCGGAAAAGTGAAGGACGTGTGGTTGAAGCTTGTCAAAGACTTGGAGGTCCAGAGAGACACCAAATACAGGGGTCAGGTTCATTTGGAGCTACTATACTCGCCTATTGGCTCAAAGAGTAGCTATACAACTCCATATAATCCGAATTTGCTAACATCAGTGGAAAAGAAAATGGAAGGCAGCAATAAAGAGACGATGGATAGAGGAAAGCCTTCTTCTCCGAAAAAGAGGGATGTGATTGTGAGAGGAGTGTTATCAGTGACAGTAATAGCAGCTGAAGATCTAGCAGCAGTAGATTTCATGGGAAAGGCTGACCCCTACGTTGTCCTTTTAATGAAGAAGAGTGAGGCAAAAGTCAAAACAAGGGTGAGATTGAGATTTCATAGTGAATGTTCTTTTTCCAAATATTTCACATTGGTTTCAAACTCAGGTAGTACACGACACACTCAATCCGGTCTGGAACCAGACATTCGACTTTGTAGTGGAAGATGCAATGCATGA 675 41.48 MKTSKTINNQLNPIWNEHFEFTVEDAATQHLTVRIFDDEGIQASELIGCVQFSLRDLEPGKVKDVWLKLVKDLEVQRDTKYRGQVHLELLYSPIGSKSSYTTPYNPNLLTSVEKKMEGSNKETMDRGKPSSPKKRDVIVRGVLSVTVIAAEDLAAVDFMGKADPYVVLLMKKSEAKVKTRVRLRFHSECSFSKYFTLVSNSGSTRHTQSGLEPDIRLCSGRCNA 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 637963 639048 + Bma018524.1 Bma04g00074 80443

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00074 224 CDD C2 2 69 - -
Bma04g00074 224 SMART C2_3c 3 66 IPR000008 -
Bma04g00074 224 CDD C2 143 181 - -
Bma04g00074 224 ProSiteProfiles C2 domain profile. 1 67 IPR000008 -
Bma04g00074 224 Gene3D C2 domain 1 100 IPR035892 -
Bma04g00074 224 PANTHER SYNAPTOTAGMIN-4 1 181 - -
Bma04g00074 224 Pfam C2 domain 141 182 IPR000008 -
Bma04g00074 224 Pfam C2 domain 3 69 IPR000008 -
Bma04g00074 224 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 93 IPR035892 -
Bma04g00074 224 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 181 IPR045050 GO:0008289
Bma04g00074 224 Gene3D C2 domain 139 201 IPR035892 -
Bma04g00074 224 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 78 196 IPR035892 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00074 - - - csv:101210249 282.722
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00074 Bma-Chr4:637963 Bma06g00980 Bma-Chr6:46360022 1.74E-06 dispersed
Bma04g00074 Bma-Chr4:637963 Bma01g00306 Bma-Chr1:2521434 8.92E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g506 . Blo12g01070 . . . . Bma04g00074 . . . Cma01g01516 . Car09g00389 . . . Cpe06g00325 . . . . . . . Cla05g01721 . Cec05g1847 Cco05g1905 Clacu05g1821 Cmu05g1705 Cre05g1836 Cone4ag1772 . . . Lsi04g02114 Csa03g04318 Chy04g00382 . . . . . . Bpe04g00063 . . Sed13g2010 Cmo01g01569 Cmo09g00449 Cma09g00440 . . . . Cpe02g00441 Bhi09g02220 Tan01g3623 Cmetu04g2724 . Hepe01g2006 Mch11g0542 . . . . . . . . . . . Cme04g00428
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0034687 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00074 Bma_Chr04 FPKM 22.806253 26.299381 75.911255 74.208252 78.556015 72.479225 76.195206 175.20636 176.346237 158.686234