Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00080 ATGAGTCTATCGCATGTACAAGAGCTTGTCGTACACCTATGGCTTCATTATCATCGAGTAGGTGAGTTCTATGTGATGGCCTACCACAACCATCTCTCCCAAGACCTTCCTCTTCATAGCTTCACAGGCCAACCTTTATCAGAAAATTCCTCGCGCATCATTTTGCCTGATCAGTTTACCGCTCACTCTTCGCCCGACCCGACCTCCAAGTCTCACCACCACCATCACCACCAGCCACTTCAGATGGCCCCTAATTGGCTTAACAACGCACTGCTTCGCACCCAAAACCCTCACTCCCACTTCTCTACCGCCACGAACAACGCCAATACCAATTTCCTCAACCTCCATTCCACTGCATCCGATTCCCCCGCTTCTCACTCCTCCAACCAGTGGCTCTCCCGCCCCATCCTTCACCGCAACCACAGCGACGTCATCGATGAAGCTGGGGACGCGTTAATCAGCCCATCTGCTGCAACACTGTCGCCCGAATCGACTGAGTTGAATAACAATGCAAGCAGCGGCGAAGCTTTGAACAAGAGCGATGGGGCGCGGGTGGAAGCAAGCGGCGACGGAAGTGGCGGAGAAGGGTTTGTGAACTGGCAGAATGCGAGGTATAAAGCTGAGATTCTGGCTCATCCACTTTACGAGCAGCTTCTTTCAGCCCACGTTGCCTGTCTTCGAATTGCAACTCCCGTCGATCAGCTGCCGAGGATCGATGCACAGCTCGCTCAGTCTCAGAACGTAGTGACCAAATACTCGTCCTTGAACCATGGTGCTCAGTCCATGGTGGGGGATGAGAAAGAGCTTGATCAGTTTATGACTCATTACGTTCTACTGCTTTGTTCCTTCAAAGATCAACTCCAACAACACGTTCGTGTTCATGCCATGGAAGCAGTGACGGCTTGTTGGGACATCGAGCAAACCCTTCAAAGCTTAACAGGAGTATCACCAGGTGAAGGCACAGGCGCTACAATGTCTGACGATGAAGACGACCAATTAGACAGCGATGCCAATTTATTTGATGGGAGTATGGATACCATGGGATTTGGTCCTCTTGTCCCTACAGAAAGTGAAAGATCCTTAATTGAGAGGGTCAGGCAAGAACTGAAGCATGAACTAAAGACGGGTTACAAGGATAAAATCGTAGATATAAGAGAGGAAATCTTGCGGAAGAGAAGAGCCGGAAAGCTTCCGGGCGACACCACTTCGGTGTTAAAGGCATGGTGGGAATCACATGCAAAATGGCCATATCCTACGGAGGAAGACAAGGCAAGATTGGTGCAGGAAACGGGTCTTCAGATGAAGCAGATAAATAACTGGTTCATCAATCAGAGGAAGAGGAACTGGCACACTAATCCTTCAACTTCCAAGACTAAACGCAAGAGGTGA 1389 49.89 MSLSHVQELVVHLWLHYHRVGEFYVMAYHNHLSQDLPLHSFTGQPLSENSSRIILPDQFTAHSSPDPTSKSHHHHHHQPLQMAPNWLNNALLRTQNPHSHFSTATNNANTNFLNLHSTASDSPASHSSNQWLSRPILHRNHSDVIDEAGDALISPSAATLSPESTELNNNASSGEALNKSDGARVEASGDGSGGEGFVNWQNARYKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVTKYSSLNHGAQSMVGDEKELDQFMTHYVLLLCSFKDQLQQHVRVHAMEAVTACWDIEQTLQSLTGVSPGEGTGATMSDDEDDQLDSDANLFDGSMDTMGFGPLVPTESERSLIERVRQELKHELKTGYKDKIVDIREEILRKRRAGKLPGDTTSVLKAWWESHAKWPYPTEEDKARLVQETGLQMKQINNWFINQRKRNWHTNPSTSKTKRKR 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 660429 662983 - Bma018530.1 Bma04g00080 80449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00080 462 MobiDBLite consensus disorder prediction 160 193 - -
Bma04g00080 462 SMART KNOX2_2 259 314 IPR005541 GO:0003677|GO:0005634
Bma04g00080 462 SMART KNOX1_2 203 247 IPR005540 GO:0003677|GO:0005634
Bma04g00080 462 ProSiteProfiles ELK domain profile. 368 388 IPR005539 GO:0003677
Bma04g00080 462 Gene3D - 389 450 - -
Bma04g00080 462 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 71 462 - -
Bma04g00080 462 SUPERFAMILY Homeodomain-like 390 452 IPR009057 -
Bma04g00080 462 ProSiteProfiles 'Homeobox' domain profile. 388 451 IPR001356 GO:0003677
Bma04g00080 462 MobiDBLite consensus disorder prediction 58 79 - -
Bma04g00080 462 Pfam Homeobox KN domain 408 447 IPR008422 GO:0003677|GO:0006355
Bma04g00080 462 MobiDBLite consensus disorder prediction 160 177 - -
Bma04g00080 462 SMART ELK_2 368 389 IPR005539 GO:0003677
Bma04g00080 462 SMART HOX_1 390 455 IPR001356 GO:0003677
Bma04g00080 462 CDD homeodomain 391 452 IPR001356 GO:0003677
Bma04g00080 462 Pfam KNOX2 domain 263 313 IPR005541 GO:0003677|GO:0005634
Bma04g00080 462 Pfam KNOX1 domain 205 246 IPR005540 GO:0003677|GO:0005634
Bma04g00080 462 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 71 462 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00080 Bma-Chr4:660429 Bma14g00577 Bma-Chr14:6216736 2.01E-103 dispersed
Bma04g00080 Bma-Chr4:660429 Bma07g01627 Bma-Chr7:51860220 6.08E-122 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57105 PF03791 KNOX2 1.40E-19 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00080 - - csv:101217292 675.626