Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00084 ATGGAAAAGGAAGATCATCTCGGCGATCCTAGGAAAATGATAATAGCTCTCATTATTCTCTGTGCTTCACTAGTTGCTTCCTTGTTTTTTCCCCTATCTCTCTGGTTATATCGACGAAACTGCTCTCTACAATCGGCGAAGAGACATGTCCAGAGCTCGGACGCTGAGAAAGGTCTCAGATTAGCGCCATTTTTGGGTAAAATCAATTCGGTGAAAATGGTAGGGAAGAAGGGATCGGTTTCGGTGATTGATTATAAACTACTAGAGAAAGCTACAAACAATTTTCGCGAGAGTAATGTTTTGGGAGAGGGTGGATTTGGTCGTGTTTACAAGGCTCGACTGGGTGAAACCTTGCTCGTTGCCGTCAAGAAGATAGACTGCAGTGGCGCAGATGCTGAGAGAGAATTTGAGAACGAATTGAATTTGTTGAGCAAAATCCAGCACCCAAATATTATTGCCCTTTTGGGGTATGGTTTTCATCGCGAGTCGAAGCTTTTTGTCTATGAATTAATGGAGAATGGATCTCTGGAAACGCAACTGCATGGACCTTCCCACGGCTCTTCTTTATCGTGGTACGTTCGGATGAAGATTGCCCTCGATGCTGCAAGAGGATTAGAGTTTCTCCACGAGCACTGCCGTCCAGCAGTGATTCACAGAGATCTAAAATCTTCCAATATTCTGTTGGACACCAACTTTAATGCCAAACTTTCTGATTTTGGCCTCGCTGTAACCGATGGTTCTCAAAACAAAAATACGATCAAGCTCTCCGGGACCTTAGGATATGTAGCTCCAGAGTATCTATTAGATGGTAAATTGACGGATAAAAGCGATGTATATGCATTCGGGATTGTTCTGCTGGAGCTGTTACTAGGGAGAAAGCCGGTGGAAAAACTGTCCCCATCTCAGTGCCAATCGATTGTCACATGGGCCATGCCTCAGCTCACTGACAGATCAAAGCTGCCTACCATTGTTGATCCTGTTATTAAAAATACTATGGATTTGAAGCATTTATATCAGGTGGCTGCAGTGGCCGTGCTGTGTGTGCAGCCAGAACCGAGCTACCGCCCTCTAATAACTGATGTGTTGCACTCTCTCATCCCTCTGGTTCCAATCGAGCTTGGAGGGACACTAAGACTATCGACACAACCACGAAAATAA 1158 44.73 MEKEDHLGDPRKMIIALIILCASLVASLFFPLSLWLYRRNCSLQSAKRHVQSSDAEKGLRLAPFLGKINSVKMVGKKGSVSVIDYKLLEKATNNFRESNVLGEGGFGRVYKARLGETLLVAVKKIDCSGADAEREFENELNLLSKIQHPNIIALLGYGFHRESKLFVYELMENGSLETQLHGPSHGSSLSWYVRMKIALDAARGLEFLHEHCRPAVIHRDLKSSNILLDTNFNAKLSDFGLAVTDGSQNKNTIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGIVLLELLLGRKPVEKLSPSQCQSIVTWAMPQLTDRSKLPTIVDPVIKNTMDLKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPIELGGTLRLSTQPRK 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 681069 683276 + Bma018534.1 Bma04g00084 80453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00084 385 ProSiteProfiles Protein kinase domain profile. 95 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g00084 385 SMART serkin_6 95 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g00084 385 Gene3D Transferase(Phosphotransferase) domain 1 171 370 - -
Bma04g00084 385 SUPERFAMILY Protein kinase-like (PK-like) 74 365 IPR011009 -
Bma04g00084 385 ProSitePatterns Protein kinases ATP-binding region signature. 101 124 IPR017441 GO:0005524
Bma04g00084 385 PANTHER BNAA04G14780D PROTEIN 11 382 - -
Bma04g00084 385 Pfam Protein kinase domain 96 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g00084 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Bma04g00084 385 PANTHER OS01G0750732 PROTEIN 11 382 - -
Bma04g00084 385 Gene3D Phosphorylase Kinase; domain 1 64 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00084 Bma-Chr4:681069 Bma10g00543 Bma-Chr10:6598170 2.45E-90 dispersed
Bma09g00887 Bma-Chr9:48138354 Bma04g00084 Bma-Chr4:681069 3.33E-29 dispersed
Bma15g00422 Bma-Chr15:4590275 Bma04g00084 Bma-Chr4:681069 6.13E-50 dispersed
Bma04g00084 Bma-Chr4:681069 Bma08g00556 Bma-Chr8:33652638 2.99E-98 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66430 PF00069 Pkinase 3.70E-46 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00084 - - qsu:111996287 577.4