Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma04g00091 | ATGTCGGACGAGGAGCATAACTTCGAGTCCAAGGCCGATGCTGGAGCCTCTAAGACCTATCCTCAGCAGGCTGGAACTATCCGCAAGAACGGTTACATCGTCATCAAGGGCCGTCCCTGCAAGGTTGTTGAGGTTTCTACTTCCAAGACAGGGAAGCACGGACATGCAAAATGCCACTTTGTGGCTATTGATATTTTTACTGCCAAGAAACTCGAGGATATCGTCCCATCGTCCCACAACTGTGATGTTCCTCATGTTACTCGCACTGATTATCAGCTGATTGACATATCTGAAGATGGATTTTTGAGTCTCTTGACTGATTCAGGTAGTACAAAAGATGACTTGAGACTTCCTACTGATGATAACCTGCTCACTCAGATTAAGGAAGGATTTGCTGAGGGGAAGGACCTTGTGCTGACAGTCATGTCATCAATGGGAGAAGAACAAATATGTGCCCTCAAGGACATTGGTCCCAAGAACTAA | 483 | 46.17 | MSDEEHNFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFLSLLTDSGSTKDDLRLPTDDNLLTQIKEGFAEGKDLVLTVMSSMGEEQICALKDIGPKN | 160 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 759090 | 760904 | + | Bma018541.1 | Bma04g00091 | 80460 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma04g00091 | 160 | PIRSF | Transl_init_eIF5A | 1 | 157 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Bma04g00091 | 160 | Gene3D | - | 86 | 159 | IPR012340 | - | |
Bma04g00091 | 160 | PANTHER | BNAA07G09420D PROTEIN | 1 | 156 | - | - | |
Bma04g00091 | 160 | SUPERFAMILY | Nucleic acid-binding proteins | 86 | 156 | IPR012340 | - | |
Bma04g00091 | 160 | SMART | eIF_5a_2 | 85 | 154 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Bma04g00091 | 160 | CDD | S1_eIF5A | 86 | 156 | - | - | |
Bma04g00091 | 160 | TIGRFAM | eIF_5A: translation elongation factor IF5A | 17 | 153 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Bma04g00091 | 160 | Pfam | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 85 | 154 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Bma04g00091 | 160 | PANTHER | TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER | 1 | 156 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Bma04g00091 | 160 | Gene3D | - | 1 | 85 | IPR014722 | - | |
Bma04g00091 | 160 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Bma04g00091 | 160 | ProSitePatterns | Eukaryotic initiation factor 5A hypusine signature. | 50 | 57 | IPR019769 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Bma04g00091 | 160 | SUPERFAMILY | Translation proteins SH3-like domain | 15 | 93 | IPR008991 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma01g01263 | Bma04g00091 | CCT | |
Bma01g02174 | Bma04g00091 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma04g00091 | Bma-Chr4:759090 | Bma14g01659 | Bma-Chr14:35180006 | 1.40E-113 | dispersed | |
Bma01g02174 | Bma-Chr1:78661310 | Bma04g00091 | Bma-Chr4:759090 | 1.87E-113 | wgd | |
Bma01g01263 | Bma-Chr1:17081543 | Bma04g00091 | Bma-Chr4:759090 | 3.92E-99 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma04g00091 | K03263 | - | csv:101214693 | 309.686 |