Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00091 ATGTCGGACGAGGAGCATAACTTCGAGTCCAAGGCCGATGCTGGAGCCTCTAAGACCTATCCTCAGCAGGCTGGAACTATCCGCAAGAACGGTTACATCGTCATCAAGGGCCGTCCCTGCAAGGTTGTTGAGGTTTCTACTTCCAAGACAGGGAAGCACGGACATGCAAAATGCCACTTTGTGGCTATTGATATTTTTACTGCCAAGAAACTCGAGGATATCGTCCCATCGTCCCACAACTGTGATGTTCCTCATGTTACTCGCACTGATTATCAGCTGATTGACATATCTGAAGATGGATTTTTGAGTCTCTTGACTGATTCAGGTAGTACAAAAGATGACTTGAGACTTCCTACTGATGATAACCTGCTCACTCAGATTAAGGAAGGATTTGCTGAGGGGAAGGACCTTGTGCTGACAGTCATGTCATCAATGGGAGAAGAACAAATATGTGCCCTCAAGGACATTGGTCCCAAGAACTAA 483 46.17 MSDEEHNFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFLSLLTDSGSTKDDLRLPTDDNLLTQIKEGFAEGKDLVLTVMSSMGEEQICALKDIGPKN 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 759090 760904 + Bma018541.1 Bma04g00091 80460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00091 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bma04g00091 160 Gene3D - 86 159 IPR012340 -
Bma04g00091 160 PANTHER BNAA07G09420D PROTEIN 1 156 - -
Bma04g00091 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Bma04g00091 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bma04g00091 160 CDD S1_eIF5A 86 156 - -
Bma04g00091 160 TIGRFAM eIF_5A: translation elongation factor IF5A 17 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bma04g00091 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bma04g00091 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bma04g00091 160 Gene3D - 1 85 IPR014722 -
Bma04g00091 160 MobiDBLite consensus disorder prediction 1 21 - -
Bma04g00091 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bma04g00091 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g01263 Bma04g00091 CCT
Bma01g02174 Bma04g00091 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00091 Bma-Chr4:759090 Bma14g01659 Bma-Chr14:35180006 1.40E-113 dispersed
Bma01g02174 Bma-Chr1:78661310 Bma04g00091 Bma-Chr4:759090 1.87E-113 wgd
Bma01g01263 Bma-Chr1:17081543 Bma04g00091 Bma-Chr4:759090 3.92E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00091 K03263 - csv:101214693 309.686