Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00098 ATGCAGGCAGATCATTCGGTGATAAGCTTGAGACCAGGTGGCGGCAGTGGCTTTCGTGGCTCTAAATTCTTCACTCCTCGATTCGAATCTTCTTCCTCTGGCGCTCCTACCTTGCATCCTCATGGCGGCGCCGCACCTGCCCTCAAGAGTGGAGACTTACGTTTTGAAGGACAGGAGCGTGCCATGTACACCCGAGATCAGCTGCTGCAACTTAGAGAGTTTAAAACTGTTTCTGAAGATATTTTGAAGATAAAACAAGAAATTGATGCGGAGTTTTTGGTGGAGGATCAATCTTGGGCTCGTGCAAATGCAGATAACAATCAACTTCCACTCCAAGGTCCTTTTTCTGATCTGGATTACCGTGATTGGCGTGGTCGGTCTTCACAGTTGCCTGCCTCTGGGGAGGAGAGATCTTGGAATGACAATAGGGAGCTAATGCCTCGAGATATTAATGGTCAACAAGATCAATTAAATACTCAGTTTATTGGGGCACTAATGTCTAGTCAAGTGGCTTGTAATACATTAGCTTTCTTATGCCAACAGGTAGGTACTGCGCCAGCTCTTGTGAAGGCTGAAGTTCCATGGTCAATGCGTAGAGGAAATCTCTCTGAGAAGGAACGTATCTTGAAAGCAGTGAAAGGCATTCTTAATAAATTGACCCCAGAGAAGTTTGACGTCCTTAAAGGTCAGCTGATTAACTCTGGAATAACAACCCCTGATATTCTTAAGGGTGTTATCTCGCTTATATTTGACAAAGCTGTGCTGGAACCAACATTTTGTCCCATGTATGCACTTTTATGCTCTGATCTTAATGACAAGCTTCCTCCATTCCCATCTGATGAGCCTGGTGGGAAGGATATCACTTTTAAACGAGTACTGTTGGATATTTGTCAAGAGGCATTTGAAAATGCCGACAATCTAAAGGCAGAAATTAGGCAGATGGCTGATCCTAAGCTAGATGCTGAACGTAGAGATAAGGAAAGAATGGTTAAACTTCGTACTCTTGGAAACATTCGCCTCATAGGTGAACTATTGAAGCAGAAGATGGTGTCTGAAAAAATTGTCCACCACATTGTTCAGGAGCTTTTGGGATCTGAAGGTAAAGTGTGTCCCGCTGAGGAGAATGTTGAGGCTATATGTCAATTTTTTAGCACCATTGGTAAGCAGCTGGATGAGGGTCCAAAATCTCGAAGAGTCAATGATATCTATTTTAGCAGGTTGAAGGAGCTGACTGCAAACATCCAACTTGCACCTAGATTGAGGTTTATGGTCCGTAATGTTGTTGATTTGCGGGCTAACAACTGGGTTCCTAGACGTGAAGAGGTGAAAGCAAAGACTATTACCGAAATCCATTCAGAAGCGGAAAAGAATCTAGGGTTGCGTCCTGGTTCTACTGCTATCATGAGAAATGATCGTAATGCTGCAGTCATTGGGGGAATGATGCCTGGGAGACCTGGCTCTGGTGGTTTAATGCCTGGAATGCCTGTGACCAGAAGGATGCCTGGTATGCCTGGGTTTGATGATGATAATTTTGAGGTTCCTCGGTCTCGATTGAAAGCAAGAAATGATGGTCCTATACAATCTGTTGGACGTGGGCAGCCTCAATTGATTAGCAAAACACCATCTCTGAATTCAAAATTTCTTCCTCAGGGAAGTGGTGGTATAATAGCAGGTAAAACAAGCGCCTTACTGCAGGGTAGTGATGTCAACCCTTCGTCCCATTCTAGTCCTATTGCTAGAATAGATGCTCCAATTGCCCACAACCGTAAGCCTGTTGCTACAACTGTTTCAGTGGTGTCCTCTCCTGAGAAGCCAGTTGTTCCCTCAACGAGGTTTAATCCCGCAGATCTTCATAAGAAAACTGTTTCACTGCTGGAGGAATATTTCAGCGTTCGAATTCTTGATGAAGCTCTGCAGTGTGTGGAGGAGTTGAAAGCTCCTTCCTATCACCCAGAGGTTGTTAAAGAAGCAATTGCTCTCTCACTAGAAAAGATCCCACCATGTGTGGAGCCCGTCACAAAGCTCTTCGAATACTTGCTCACCAAAAAGACATTGACTGCTCCAGATATAGGGGCCGGGTGCATTCTTTATGGCGCAATGATGGATGACATTGGCATCGATTTGCCTAAAGCTCCAAATAATTTCGGTGAGATTCTAGGAAAGTTAGTCTTAATTGGGGAGTTGAACTTAAAGGTTGTGAAGGAAATTTTGACAAAGGTGGAAGATAACTTTTACAGGTCGTCCATCTTTGGAGGTGTTCTTAGAAGCATAAATTCTAGCCCCTCGGGGCTAGCAGTTGTCGAAGGCCAGGCTGCTGAGATCAGGGCTTGTGAGAGCATTCTCTCT 2346 44.54 MQADHSVISLRPGGGSGFRGSKFFTPRFESSSSGAPTLHPHGGAAPALKSGDLRFEGQERAMYTRDQLLQLREFKTVSEDILKIKQEIDAEFLVEDQSWARANADNNQLPLQGPFSDLDYRDWRGRSSQLPASGEERSWNDNRELMPRDINGQQDQLNTQFIGALMSSQVACNTLAFLCQQVGTAPALVKAEVPWSMRRGNLSEKERILKAVKGILNKLTPEKFDVLKGQLINSGITTPDILKGVISLIFDKAVLEPTFCPMYALLCSDLNDKLPPFPSDEPGGKDITFKRVLLDICQEAFENADNLKAEIRQMADPKLDAERRDKERMVKLRTLGNIRLIGELLKQKMVSEKIVHHIVQELLGSEGKVCPAEENVEAICQFFSTIGKQLDEGPKSRRVNDIYFSRLKELTANIQLAPRLRFMVRNVVDLRANNWVPRREEVKAKTITEIHSEAEKNLGLRPGSTAIMRNDRNAAVIGGMMPGRPGSGGLMPGMPVTRRMPGMPGFDDDNFEVPRSRLKARNDGPIQSVGRGQPQLISKTPSLNSKFLPQGSGGIIAGKTSALLQGSDVNPSSHSSPIARIDAPIAHNRKPVATTVSVVSSPEKPVVPSTRFNPADLHKKTVSLLEEYFSVRILDEALQCVEELKAPSYHPEVVKEAIALSLEKIPPCVEPVTKLFEYLLTKKTLTAPDIGAGCILYGAMMDDIGIDLPKAPNNFGEILGKLVLIGELNLKVVKEILTKVEDNFYRSSIFGGVLRSINSSPSGLAVVEGQAAEIRACESILS 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 792116 797192 - Bma031083 Bma04g00098 80467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00098 782 Pfam MA3 domain 618 724 IPR003891 -
Bma04g00098 782 MobiDBLite consensus disorder prediction 28 49 - -
Bma04g00098 782 Gene3D - 200 435 - -
Bma04g00098 782 MobiDBLite consensus disorder prediction 521 544 - -
Bma04g00098 782 SMART ma3_7 617 729 IPR003891 -
Bma04g00098 782 ProSiteProfiles MI domain profile. 616 738 IPR003891 -
Bma04g00098 782 SUPERFAMILY ARM repeat 202 437 IPR016024 -
Bma04g00098 782 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 1 782 - -
Bma04g00098 782 MobiDBLite consensus disorder prediction 528 544 - -
Bma04g00098 782 SUPERFAMILY ARM repeat 612 768 IPR016024 -
Bma04g00098 782 Gene3D - 611 769 - -
Bma04g00098 782 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 1 782 IPR045208 GO:0003743
Bma04g00098 782 SMART if4_15 209 434 IPR003890 GO:0003723|GO:0005515
Bma04g00098 782 Pfam MIF4G domain 209 434 IPR003890 GO:0003723|GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00098 Bma-Chr4:792116 Bma04g01151 Bma-Chr4:29507282 1.78E-06 dispersed
Bma04g00098 Bma-Chr4:792116 Bma05g01311 Bma-Chr5:52362147 5.55E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00098 K03260 - cit:102621028 1007.67