Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00100 ATGGCTCTTTTTGTTCTTGATGGAGGATGTTCATTTGAACAAGCTATTATGGAGAGGGGGCGAGGGAATTCTCTTTTCAACTTCTTGTTTGAGCTTGGCTCTAAAGAACACACGTATTACGTTTGGAGACTTTACTCATTTGCTCAGGGTGATACTCTCCAAAGATGGCGAACAGAACCTTTTATCATGATAACTGGTAGTGGGAGATGGATCCCACCACCTTTACCAACAGCAAAAAGTCCAGAGCATGAAAAAGAATCTAGTACCACATATGCCGCAGGAAGAAGCAAGCGCTTGGAACTGGAAAGAGCATTGACCGACTCTCAAAGGGATGAGTTTGAGGACATGCTCCGCGCTTTGACATTGGAGAGGAGCCAAATTAAGGAAGCTATGGGGTTTGCATTGGATAATACAGATGCAGCTGGAGAGGTTGTTGAAGTTCTGACTGAATCTTTGACGCTTAAAGAGACCCCTATTCCTACTAAAGTTGCGAGGCTGATGCTTGTATCTGATATTCTTCATAATAGTAGTGCCCCTGTAAAGAATGCATCTGCATATAGGACAAAATTTGAAGCAGCATTGCCTGATATTATGGAGAGCTTTAATGATCTGTATAGAGGCATTACTGGAAGGATAACAGGCAGAGGCCCTTAA 654 42.97 MALFVLDGGCSFEQAIMERGRGNSLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPTAKSPEHEKESSTTYAAGRSKRLELERALTDSQRDEFEDMLRALTLERSQIKEAMGFALDNTDAAGEVVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEAALPDIMESFNDLYRGITGRITGRGP 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 802522 804877 - Bma018547.1 Bma04g00100 80469

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00100 217 PANTHER - 1 214 - -
Bma04g00100 217 ProSiteProfiles SURP motif repeat profile. 1 40 IPR000061 GO:0003723|GO:0006396
Bma04g00100 217 Coils Coil 110 130 - -
Bma04g00100 217 MobiDBLite consensus disorder prediction 73 92 - -
Bma04g00100 217 SUPERFAMILY ENTH/VHS domain 107 199 IPR008942 -
Bma04g00100 217 SMART 558neu5 112 213 IPR006569 -
Bma04g00100 217 ProSiteProfiles CID domain profile. 105 217 IPR006569 -
Bma04g00100 217 Gene3D - 106 211 IPR008942 -
Bma04g00100 217 Gene3D Surp module 1 52 IPR035967 GO:0003723|GO:0006396
Bma04g00100 217 PANTHER RNA PROCESSING PROTEIN LD23810P 1 214 - -
Bma04g00100 217 SMART surpneu2 1 49 IPR000061 GO:0003723|GO:0006396
Bma04g00100 217 Pfam CID domain 112 201 IPR006569 -
Bma04g00100 217 Pfam Surp module 1 47 IPR000061 GO:0003723|GO:0006396
Bma04g00100 217 SUPERFAMILY Surp module (SWAP domain) 1 52 IPR035967 GO:0003723|GO:0006396
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00100 K12842 SR140; U2-associated protein SR140 - nnu:104609179 393.66
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g594 . . . Bda03g00108 . . Bma04g00100 . Cmo05g00348 Cmo12g00321 . Cma05g00344 . Car12g00350 Sed11g1135 Cpe07g00326 . Bhi04g00058 Tan02g2773 Cmetu03g2041 . . . Lcy13g1839 . . . . . . . . . . . . . . Cme03g01569 . . . . . Bpe04g00092 . . . . . . Cma12g00368 . Car05g00290 Cpe11g00290 . . . . . . . . Cla08g01372 Cam08g1841 Cec08g1419 Cco08g1552 Clacu08g1536 . Cre08g1319 Lsi08g01255 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005029 1 2 1 1 1 1 2 1 1 3 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 3 1 40