Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00104 ATGTCGAGCGACGAAGAGGGGTTTTTGGAGCAACAATTGGAGATTCAATTGCAAGAGCAAAGAGATTCTCTCGCTGCTCTGAAAGAAGCCCTGGCTTCTGACCCCTCTAATTCTGAACTCCTTGAGGTTCATGGAGAGCTCGTTCAGGCAATCAAAGATGCTGAGGAAGGTCTTCTCCACCTTAAACGTTCAAGGCTATTACGAGAGGCTGATTCGGTTCTTAATGCTTTCAATAATTCTGCCGAAAATGTTAAGGAAGAATCTCTCGATCCATCTGATGATCCAGAATCTCTCGAGGAAGAGAAATTCTTTGTTGGGTCGAAGTGCAGATTTCGTCACACTGACGGAAGATGGTATGATGGTCAAATTGTTGCCCTAGACGATTCTAATTCAGCAACCATATCTTTCCTCACACCTACATCTGAAAATATGCTGATTTGCAAGTTCTTCCTACAGCAACGATGTCGATTTGGTACTAGTTGCCGCTTGTCACATGGAGTTGATGTTTCGTTATCCTCGCTGAAGAAGTATGTGCCAACGATGTGGGACCAATCACTAGTGGGGTCCAGCATATGGGCTCTCTCTGTTTCAGATAATAGTTTTGGCATCTGGAGAGAAGCTGAACTGGAATCATGGGATGATACACATGAACTTGGACAAGTTGTTTTCAGAGTTGATGGAAGCTCAGAAAAGCTTGGCGTTGAGGCTATAGCCTTGTCAGGTATCGATAAGGAAGAAAGTGATTCCAGCTCTGAGCAATCTGATTCTAGCGAGGACGAAGAAAATGGTTCAAGTGGAATGGGATTCATGGAAAGTACTTCACAGCTAAAGGGGACCCAGAGAGATACAGTTTTATTTGCAATGTGGGAAAATCACACTAGGGGTGTTGCCTCAAAGATGATGGCTAATATGGGATATCGCGAAGGGATGGGATTGGGGGCAACAGGGCAGGGGATGTTAAACCCTTTAAATGTGAAGGTTCTTCCACCGAAGCAGTCTCTTGATCTGGCCATTGAGGCTCAAAAAGGATCAGAGATTCAAGAGAATAAAGTTAAGAAACGAAGTAGAGGCGGGAAGAGAAAACGCGAGAAGAAATTTGCAGAGCTAGCCCGTAAAGCCAAAGACGAAGAGGAATCCAAACCAGATGTTTTCCGCTTGATAAACAATCAGCTGGCAATGCACCACGAAGCTCTGGTTGGTCAGTCTCAGTCAGGTAAGAAACAGAAAGAAAAAGGTCTGAGGGAGGGGAATAAGGTGGACAGGCGGGCTCTGGTTGCATACGATGATGAGGTGAAAGACTTGAGAATTCGAATAGAGAGGCTTGAGGAAATGGCTAGCAGAAACCGAAAAGAGAAGGCTGTTTATGAAGCTGCTACGAAGAAACTAAATGAGACTCGCAAGGCATTGGCCAAGGCCGAGGCAGCTCGTGCATCTGCTTCAAACACAGTTGTTAGCAGAGAAAAGGAGAAAAGGTGGCTGAAGTTTTAG 1488 45.09 MSSDEEGFLEQQLEIQLQEQRDSLAALKEALASDPSNSELLEVHGELVQAIKDAEEGLLHLKRSRLLREADSVLNAFNNSAENVKEESLDPSDDPESLEEEKFFVGSKCRFRHTDGRWYDGQIVALDDSNSATISFLTPTSENMLICKFFLQQRCRFGTSCRLSHGVDVSLSSLKKYVPTMWDQSLVGSSIWALSVSDNSFGIWREAELESWDDTHELGQVVFRVDGSSEKLGVEAIALSGIDKEESDSSSEQSDSSEDEENGSSGMGFMESTSQLKGTQRDTVLFAMWENHTRGVASKMMANMGYREGMGLGATGQGMLNPLNVKVLPPKQSLDLAIEAQKGSEIQENKVKKRSRGGKRKREKKFAELARKAKDEEESKPDVFRLINNQLAMHHEALVGQSQSGKKQKEKGLREGNKVDRRALVAYDDEVKDLRIRIERLEEMASRNRKEKAVYEAATKKLNETRKALAKAEAARASASNTVVSREKEKRWLKF 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 822121 824398 + Bma018550.3 Bma04g00104 80473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00104 495 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 495 - -
Bma04g00104 495 SMART G-patch_5 291 337 IPR000467 GO:0003676
Bma04g00104 495 ProSiteProfiles G-patch domain profile. 293 339 IPR000467 GO:0003676
Bma04g00104 495 SMART c3hfinal6 141 167 IPR000571 GO:0046872
Bma04g00104 495 Coils Coil 424 482 - -
Bma04g00104 495 Pfam CCCH-type zinc finger 146 166 IPR041367 -
Bma04g00104 495 Gene3D - 141 185 - -
Bma04g00104 495 Pfam G-patch domain 293 334 IPR000467 GO:0003676
Bma04g00104 495 Coils Coil 67 87 - -
Bma04g00104 495 Gene3D - 79 140 - -
Bma04g00104 495 MobiDBLite consensus disorder prediction 243 276 - -
Bma04g00104 495 MobiDBLite consensus disorder prediction 260 276 - -
Bma04g00104 495 Coils Coil 10 30 - -
Bma04g00104 495 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00104 - - - qlo:115974798 648.277
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00104 Bma-Chr4:822121 Bma04g01202 Bma-Chr4:33143531 7.49E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g608 . Blo12g01042 . Bda03g00112 . . Bma04g00104 . Cmo05g00345 Cmo12g00324 . . . Car12g00354 Sed03g1654 Cpe07g00329 . Bhi04g00065 Tan02g2778 Cmetu03g2063 . Hepe10g0207 . Lcy13g1843 . . . . . . . . . . Cone20ag0311 . . . Cme03g01563 . . . . . . . . . . . . Cma12g00371 . Car05g00287 Cpe11g00287 . . . . . . . . Cla08g01377 Cam08g1847 Cec08g1425 Cco08g1558 Clacu08g1542 . Cre08g1325 Lsi08g01259 . Chy03g01073 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010406 1 1 1 1 0 1 2 1 1 1 0 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57108 PF01585 G-patch 4.10E-12 CL0449 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00104 Bma_Chr04 FPKM 19.488935 20.497004 13.894308 13.660753 7.408559 7.4515 6.312298 22.701546 24.00461 23.097349