Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00111 ATGGCATTTCGACTTGCGTTCTTCGTTCTGGCGTTTTGCTCAGTTTTGAGTTTGGGTTTAGTGCAATCAGATGATGGAGCGACTTTGTTGGAAATGAAGAAGTCTTTTAAGGACGTAGACAATGTTTTATACGACTGGACGGATTCACCCTCTTCAGATTATTGTGTTTGGAGAGGCATTGAGTGCGACAATATCACCTTCACTGTGGTTGCTCTCAATCTTTCAGGTTTAAACCTTGATGGAGAGATTTCATCCGCAATCGGTGACCTCAAAAGCCTCGTAACCATTGACTTGAGAGGAAATCGTCTCTCGGGGCAAATTCCAGACGAGATTGGTGACTGCTCTTTGTTGAGGAATCTAGACTTGTCATTCAATGATATATATGGAGATATACCGTTTTCTATCTCTAAGTTGAAGCAACTGGAAATTATAGTTTTGAAAAACAATCGCTTGATCGGACCAATTCCCTCTACTCTATCTCAAATTCCAAATCTGAAGGTTTTAGATCTTGCTCAGAATAATCTAAGCGGAGAAATTCCAAGGCTTCTATACTGGAATGAAGTGCTGCAGTATCTGGGATTACGAGGAAATAATTTGGTTGGTAATCTCTCTCCTGATATTTGCCAACTTACAGGGTTGTGGTACTTTGATGTGAGAAACAACAGTTTGACAGGAAGTATTCCACCAAATATAGGGAACTGCACTGCCTTCCAGGTCTTAGACCTATCATACAATCAGCTTACTGGAGAGATTCCATTCAACATTGGTTTCCTACAAGTTGCTACTTTGTCACTGCAAGGAAATCAACTCTCTGGTGAGATACCTGCTGTCATTGGGTTAATGCAGGCACTTGCAGTGTTAGATCTGAGCTGCAACATGTTAAGTGGTTCCATTCCTCCTATCTTGGGAAACTTGACCTACACTGAGAAATTGTACTTGCATGGCAACAAGCTAAGCGGTCCCATTCCTTTGGAGCTTGGGAATATGACTAAGCTTCACTATCTGGAATTGAATGACAATCAATTAACAGGGCATATTCCTGTGGAGCTTGGAAAGCTTACCGATTTGTTTGATCTAAACATAGCCAACAACAGACTCGAAGGACCTATACCCGACAATCTTAGTTCATGTACAAATCTGAACAGTCTAAATGTACATGGAAACAATTTGAATGGCTCCATTCCTCCTGCTTTTCAAAGGCTAGAGAGTATGACTTATCTAAATCTCTCTTCAAACTTTCTTTGGGGCTCCATTCCAATTGAGCTGTCTAGGATTGGTAACTTGGACACTTTGGACATATCCAGTAACAAAATTAGTGGATCGATTCCTTCTTCCCTCGGCGACCTCGAGCACCTCCTTAAGTTGAACTTGAGCAGAAACGATTTAACTGGATATATCCCGGCAGAATTTGGTAATCTAAGAAGTGTTATGGTGATAGATCTTTCCGACAATCATCTCTCAGGCCCGATTCCTCAAGAATTTAGTCAGCTTCAGAACATCTTTTCCTTGAGACTGGAAAACAACAATCTGTCGGGGGATGTGTTGTCTTTGATTAACTGCCTGAGTTTAACTGAATTGAACGTATCTTATAATGACTTAGCTGGTGTTATTCCAACCAGCAATAACTTCTCAAGATTCCCATTTGAGAGTTTCATTGGCAATCCTGGTCTCTGTGGATATTGGCTGAATTATCCATGCCTTGAATCTCGATCTTCAGAGAGAGTCACTATATCTAAAGCGGCAATCATAGGCATTGCTCTTGGTGGCCTCGTGATTCTTCTCATGATCCTCTTGGCTGCATTTCGACAGAACAACACAACTACATTTCCTGATGGATCAATTGACAAACCGGTTAATTATTCAACCCCAAAGCTAGTGATTTTGCATATGAACATGGCACTTCATGTATATGAAGACATTATGAGAATGACCGAAAATTTGAGTGAAAAGTACATAATCGGGTACGGGGCATCAAGTACTGTATACAAATGTGTTCTTAAAAACTGCAAACCGGTGGCCATCAAAAGACTATACTCCCACTATACCCAGAGTCTGAAAGAATTCGAAACTGAACTTGAGACGGTGGGAAGCATCAAGCACAGAAATCTGGTCAGCCTCCAGGGTTATTCCTTGTCCCCTTACGGCAACCTTCTCTTCTACGACTATATGGAAAATGGCAGTCTTTGGGATCTTCTACACGGGCCCATGCAAAAGAAAAAACTTGGTTGGGACACTCGGCTTAAGATTGCGCTTGGAGCAGCTCAAGGGCTTTCATATTTACACCATGACTGTAGTCCGAGGATCATCCACAGAGATGTCAAATCGTCTAATATTCTTTTGGACAAGGATTTTGAACCTCATCTTACGGACTTTGGCATCGCCAAGATCTTATGCTCCTCGAAAACGTATACGTCCACCTATATTATGGGCACGATTGGCTATATTGACCCCGAGTATGCTCGAACGTCTCGACTCACGGAGAAATCTGATGTTTACAGTTATGGCATTGTGTTGCTAGAGTTGCTCACAGGAAGAAAGGCTGTGGACAACGAGTCAAATCTCCATCATCTTATCTTATCGAAGACAGCCAACAATGCTGTTATGGAGACGGTTGATCCCGGGAATTACTTCTACGTGTAA 2640 41.86 MAFRLAFFVLAFCSVLSLGLVQSDDGATLLEMKKSFKDVDNVLYDWTDSPSSDYCVWRGIECDNITFTVVALNLSGLNLDGEISSAIGDLKSLVTIDLRGNRLSGQIPDEIGDCSLLRNLDLSFNDIYGDIPFSISKLKQLEIIVLKNNRLIGPIPSTLSQIPNLKVLDLAQNNLSGEIPRLLYWNEVLQYLGLRGNNLVGNLSPDICQLTGLWYFDVRNNSLTGSIPPNIGNCTAFQVLDLSYNQLTGEIPFNIGFLQVATLSLQGNQLSGEIPAVIGLMQALAVLDLSCNMLSGSIPPILGNLTYTEKLYLHGNKLSGPIPLELGNMTKLHYLELNDNQLTGHIPVELGKLTDLFDLNIANNRLEGPIPDNLSSCTNLNSLNVHGNNLNGSIPPAFQRLESMTYLNLSSNFLWGSIPIELSRIGNLDTLDISSNKISGSIPSSLGDLEHLLKLNLSRNDLTGYIPAEFGNLRSVMVIDLSDNHLSGPIPQEFSQLQNIFSLRLENNNLSGDVLSLINCLSLTELNVSYNDLAGVIPTSNNFSRFPFESFIGNPGLCGYWLNYPCLESRSSERVTISKAAIIGIALGGLVILLMILLAAFRQNNTTTFPDGSIDKPVNYSTPKLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYTQSLKEFETELETVGSIKHRNLVSLQGYSLSPYGNLLFYDYMENGSLWDLLHGPMQKKKLGWDTRLKIALGAAQGLSYLHHDCSPRIIHRDVKSSNILLDKDFEPHLTDFGIAKILCSSKTYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLILSKTANNAVMETVDPGNYFYV 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 880559 886270 - Bma018557.2 Bma04g00111 80480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00111 879 Gene3D Ribonuclease Inhibitor 22 185 IPR032675 -
Bma04g00111 879 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 5 873 - -
Bma04g00111 879 Pfam Leucine rich repeat 140 199 IPR001611 GO:0005515
Bma04g00111 879 Pfam Leucine rich repeat 427 486 IPR001611 GO:0005515
Bma04g00111 879 ProSiteProfiles Protein kinase domain profile. 647 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g00111 879 Pfam Leucine Rich repeat 520 535 IPR001611 GO:0005515
Bma04g00111 879 ProSitePatterns Serine/Threonine protein kinases active-site signature. 768 780 IPR008271 GO:0004672|GO:0006468
Bma04g00111 879 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Bma04g00111 879 SUPERFAMILY RNI-like 205 537 - -
Bma04g00111 879 SMART serkin_6 647 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g00111 879 SUPERFAMILY Protein kinase-like (PK-like) 624 858 IPR011009 -
Bma04g00111 879 Gene3D Ribonuclease Inhibitor 283 569 IPR032675 -
Bma04g00111 879 Gene3D Transferase(Phosphotransferase) domain 1 723 876 - -
Bma04g00111 879 ProSiteProfiles Leucine-rich repeat profile. 164 186 IPR001611 GO:0005515
Bma04g00111 879 Pfam Protein kinase domain 650 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g00111 879 Gene3D Phosphorylase Kinase; domain 1 616 722 - -
Bma04g00111 879 SUPERFAMILY L domain-like 24 258 - -
Bma04g00111 879 SMART LRR_typ_2 162 186 IPR003591 -
Bma04g00111 879 SMART LRR_typ_2 449 472 IPR003591 -
Bma04g00111 879 SMART LRR_typ_2 401 425 IPR003591 -
Bma04g00111 879 SMART LRR_typ_2 329 353 IPR003591 -
Bma04g00111 879 SMART LRR_typ_2 210 234 IPR003591 -
Bma04g00111 879 SMART LRR_typ_2 281 305 IPR003591 -
Bma04g00111 879 SMART LRR_typ_2 90 114 IPR003591 -
Bma04g00111 879 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 5 873 - -
Bma04g00111 879 Gene3D Ribonuclease Inhibitor 186 276 IPR032675 -
Bma04g00111 879 ProSitePatterns Protein kinases ATP-binding region signature. 653 675 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00111 Bma-Chr4:880559 Bma10g01166 Bma-Chr10:40786128 0 dispersed
Bma04g01347 Bma-Chr4:46162121 Bma04g00111 Bma-Chr4:880559 1.28E-18 transposed
Bma07g00443 Bma-Chr7:5381589 Bma04g00111 Bma-Chr4:880559 1.84E-82 transposed
Bma14g01770 Bma-Chr14:38044881 Bma04g00111 Bma-Chr4:880559 3.94E-15 transposed
Bma15g00052 Bma-Chr15:688185 Bma04g00111 Bma-Chr4:880559 3.86E-137 transposed
Bma01g02192 Bma-Chr1:78803560 Bma04g00111 Bma-Chr4:880559 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66431 PF00069 Pkinase 5.80E-42 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00111 K20718 - rcu:8258591 1493.4