Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00113 ATGATTGCTTACCTCGAACATTTCTTACAGGAAACTGAAACAGCTTCGAGGAATGAATTCGTCGATGTTTCGAGTCTTTGTAAGGCGCTGAACCTCCATGGGAGTATCATTGATTGTGGAGCTTCAGATTTAGCCGGTAGAGATTTTGGCGGAATCTACTCATCGAGTCCTCTGGCTTTAGTTACACCCGCCGGGACTGAAGACGTAGTGAACGTAGTTAAAGCGGCTTTACGGTCCTCAAATCTGACAGTGGCGGCACGGGGGAATGGCCACTCTATCAATGGTCAGGCGATGGCAGATCGAGGGCTCGTCATTGATACACGGTCGATGGCGGACCATTTCCAAGTGAGGATGATAAATGGCTCCGCCTACGCGGACGTTTCCGGAGGAGCATTATGGGGAGATGTCCTGAAACGATGCGTTTCCGGCTACGGGCTTTGTCCGAGGTCTTGGACCGATTATCTTAGTTTGACGGTGGGAGGTACGTTATCTAACGCCGGCGTGAGCGGCCAAACCTTCCGTTACGGTCCTCAAATCTCAAACGTAACGGAACTAGAAGTTGTGACAGGCACAGGCGACTCTCTAGTGTGCTCTGAAACAGAAAATTCCGATCTCTTTTTCGGCGTTCTCGGAGGCCTTGGTCAATTTGGCATCATTACCCGAGCTCGAATTCTGCTACAGCAAGCACCGGACATGGTGAGATGGATAAGAGTGGTCTACGCGGAGTTCGACAAGTTCACTCGAGACGCTGAATGGCTGGTGACTCGGCCGGACGGCGAGTCGTTCGACTATGTGGAAGGTTTCGTTTTCTCTAACAACGATAATCCGGTGACCGGTTGGCCTTCGGTGGTGCTAGACCCGGACGAAGAGTTCGATTCCGCTCGTGTTCCTCAAACCAGTGGCTCCGTCGTCTACTGCCTGGAAGTAGCTCTGCACTACCGGAATAGCGACCACCCTTCGACGGTGGACAAGGGGGCTTTGTCTTTTACTGCTGGAAAATGTCTGCCTTATTTACTTGTCTACCATCTGTCTCAGGCTGCCCGTAGATTGCTCGGACGGCTGGGATTTTTAAGGCAATTCAAATCCGAGGTGGACGTGAGCTACGTGGAGTTTTTATCGCGTGTGGAGCGAGCAGAGGAACATGCTAAGGCTAATGGGGTATGGGACGCTCCTCACCCTTGGTTGAACTTGTTCGTTTCCAAATCAGGCATTGCTGATTTTGATCGTGCGGTGTTCAAAGGCCTCCTCAGCAACGGAGTCGGTGGGCCCATTCTTGTCTACCCTCTCCTGCGAAACAAGTACAAAAGCAAGTCCACAGACGTAACTGTGTGGGTGGGCGTAGAGGATAGAGAAAAAAAGCGACGTAACTTTCAGTGGGGGATGGATAACGACAAGTCGATTTATTCGCCGGCCTGGTTATGTTTGTCTGCACCTTCCCTCTTCCTTTTCCATTATTCACTAATTTGTTTTGGCTTTGATTTGACGAGTCAATTCAGGTGGGTTGGTCGGACGTCGGCGGTGTTGCCGGAAGGTGAAATCTTCTACATCATAGCATTGCTGCGTTTTTCTCCACCTTACCCAAAAGGCCCTTCTGTTGAAAAACTGCTTTCTCAGAACAACCAAATCATTCGTCTCTGCAAAAAGAAATGCATCGACTTCAAGCTTTATCTCCCTCACTACACATCTCAAGAAGATTGGAAGCTACATTTTGGAAGTCAGTGGTCAAGATTCGTCGAGAGAAAGGGACTTTACGATCCAATGGCCATTCTTGCTCCAGGTCAAAAGATCTTCACCAGAATTCCTCGGCTTTAG 1812 49.78 MIAYLEHFLQETETASRNEFVDVSSLCKALNLHGSIIDCGASDLAGRDFGGIYSSSPLALVTPAGTEDVVNVVKAALRSSNLTVAARGNGHSINGQAMADRGLVIDTRSMADHFQVRMINGSAYADVSGGALWGDVLKRCVSGYGLCPRSWTDYLSLTVGGTLSNAGVSGQTFRYGPQISNVTELEVVTGTGDSLVCSETENSDLFFGVLGGLGQFGIITRARILLQQAPDMVRWIRVVYAEFDKFTRDAEWLVTRPDGESFDYVEGFVFSNNDNPVTGWPSVVLDPDEEFDSARVPQTSGSVVYCLEVALHYRNSDHPSTVDKGALSFTAGKCLPYLLVYHLSQAARRLLGRLGFLRQFKSEVDVSYVEFLSRVERAEEHAKANGVWDAPHPWLNLFVSKSGIADFDRAVFKGLLSNGVGGPILVYPLLRNKYKSKSTDVTVWVGVEDREKKRRNFQWGMDNDKSIYSPAWLCLSAPSLFLFHYSLICFGFDLTSQFRWVGRTSAVLPEGEIFYIIALLRFSPPYPKGPSVEKLLSQNNQIIRLCKKKCIDFKLYLPHYTSQEDWKLHFGSQWSRFVERKGLYDPMAILAPGQKIFTRIPRL 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 896739 899279 - Bma018559.2 Bma04g00113 80482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00113 603 Gene3D - 557 597 IPR016167 -
Bma04g00113 603 SUPERFAMILY FAD-linked oxidases, C-terminal domain 498 598 IPR016164 GO:0003824|GO:0050660
Bma04g00113 603 Gene3D - 45 106 IPR016167 -
Bma04g00113 603 Gene3D - 107 231 IPR016169 -
Bma04g00113 603 PANTHER CYTOKININ DEHYDROGENASE 7 21 438 - -
Bma04g00113 603 PANTHER CYTOKININ DEHYDROGENASE 7 499 601 - -
Bma04g00113 603 SUPERFAMILY FAD-linked oxidases, C-terminal domain 230 435 IPR016164 GO:0003824|GO:0050660
Bma04g00113 603 SUPERFAMILY FAD-binding/transporter-associated domain-like 39 226 IPR036318 GO:0050660
Bma04g00113 603 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 230 442 IPR015345 GO:0009690|GO:0019139|GO:0050660
Bma04g00113 603 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 498 597 IPR015345 GO:0009690|GO:0019139|GO:0050660
Bma04g00113 603 Pfam FAD binding domain 57 197 IPR006094 GO:0050660
Bma04g00113 603 ProSiteProfiles PCMH-type FAD-binding domain profile. 53 229 IPR016166 GO:0071949
Bma04g00113 603 Gene3D - 233 325 IPR016170 -
Bma04g00113 603 Gene3D - 343 441 IPR016170 -
Bma04g00113 603 Gene3D - 499 556 IPR016170 -
Bma04g00113 603 PANTHER GULONOLACTONE OXIDASE 21 438 - -
Bma04g00113 603 PANTHER GULONOLACTONE OXIDASE 499 601 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00113 K00279 CKX; cytokinin dehydrogenase [EC:1.5.99.12] - jre:108985996 682.559
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02195 Bma04g00113 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00113 Bma-Chr4:896739 Bma11g00580 Bma-Chr11:8591240 8.39E-112 dispersed
Bma01g02195 Bma-Chr1:78842195 Bma04g00113 Bma-Chr4:896739 3.66E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g160 Blo01g01447 Blo12g01030 Bda01g00639 Bda03g00126 Bpe02g01249 Bpe02g00507 Bma04g00113 Bma01g02195 . . Cma01g01702 . Car09g00311 . . . Cpe06g00257 . . . . . . . Cla05g01625 Cam05g1735 Cec05g1743 Cco05g1800 Clacu05g1725 Cmu05g1609 Cre05g1738 Cone4ag1698 Cone7ag1614 Cone17ag0943 Cone20ag0286 Lsi04g01389 . . . . . Bda01g01004 . . Bpe04g00111 . . Sed05g1792 Cmo01g01809 Cmo09g00362 Cma09g00363 . Car01g01320 . . Cpe02g00289 Bhi09g03084 Tan01g3470 Cmetu07g2288 . Hepe01g1915 Mch11g0450 . . . . . . . . . . . Cme07g00178
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004654 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00113 Bma_Chr04 FPKM 0.0 0.0 0.0 0.0 1.920008 1.149882 1.061215 0.0 0.0 0.0