Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00114 ATGGAAGAAGAGTACATGGCCAGGACCATCTGTCTTTCTGTTGTTTCACTGATTTTGTTCCTTATTTCAAGGCTTGCTCATTCCATTTGGTGGAGACCCAAAACCCTGGAAAAGTATTTGAGAAACCAGGGCATTAAAGGCACTGCTTTCAATCTCGGTGGTGACAAGGAAGAGATGAATAATTCTTATGGGAAAGCATGGTCCAAACCCATGAGCCTAAACCACAATATTGCTCCCAGAGTCTTACCCTTCTTTTATGAAATGATTCAAACTTATGGGAAAGTTTCTTTTAGCTGGTTTGACAACAGACCAAGACTCGTAATCGGAGACACAGAGCTAATGAGACTGATATTAGCTGATAAGAGAGGCGACTTTGTGAAGCCGCCATTGAACCCTCTGGTAGAGCTTTTACAACTAGGAGTTTCTACTTTGGAAGGAGAGAAATGGGCTAAACGGAGAAGGTTGATCACACCTGCATTTCACCTCGACAAGTTAAAAGGAATGATGCCAGGATTTTCAACCAGTTGCAATAGCCTCATCAATCGATGGGAAAATTTGTTGGGTTCAAAGGAAGTCATTGAAGTAGATGTCTCAGAAGAATTTCAAAATCTCGCCGGCGACATCATTTCCCGCACGGCCTTTGGCAGCAGCTTCGAAGATGGAAAGAGGATTTTCCAACTTCAAAATGAACAAGCTGTTTTGGTTCTGGAAGCATATCATGGCACATACATACCAGGTTTCAGGTACGTACCTACAAAGAAAAACAAGAAGAGATACAGTTTAGACAATGAGATCAAAGCTATACTACGAAACATGATCCACAGAAAAGAGGGGGCGATCAAAAAATGCACACCCGTTAACGATGACCTACTGGGATTGCTGTTGAAATGCAAAGACGAAAGCGACAATGATTTGACGATAGATGAGGTGATAGAAGAATGCAAGTTATTCTACTTTGCTGGCAAAGAGACCACCGCAAACTTGCTCACGTGGACTTTGATCCTATTATCAATACATTCAGATTGGCAAGACAAGGCAAGAAAAGAGGTCTTGGATGTCTGTGGAAGGAAAACACCCGATTTCGAAACCATTGGCCGTCTCAAAATTGTATCATGGATACTTAATGAAGTTCTAAGACTATATCCCCCTGTGACTGCTTTATTTCGCCATACCAGACGGGAAACCATCATCGGAGGAATGTCCATTCCGGCAGGCGTTGATTTTTACCTGCCAATTCTCTTGCTTCATCACGACAGAGAGTATTGGGGTGAAAACGCAGAAGAATTTGATCCCGAAAGATTCAGCCAAGGCATTTCGAAAGCATCGATAGATCAAAACACCTTTTACCCTTTCGGATGGGGTCCAAGAATTTGTCTAGGCCAAAATTTTGCCATGATTGAAGCAAAGATGGCTCTGGCTCTTGTTCTTCAACACTTTTGGTTTGAGCTTTCGCCTGCTTACCTTCATGCGCCCTTTGTTGTCATCACTCTTCAGCCTCAACATGGAGCCCCTATTTTACTCCACAGACTTTCCTAA 1536 42.71 MEEEYMARTICLSVVSLILFLISRLAHSIWWRPKTLEKYLRNQGIKGTAFNLGGDKEEMNNSYGKAWSKPMSLNHNIAPRVLPFFYEMIQTYGKVSFSWFDNRPRLVIGDTELMRLILADKRGDFVKPPLNPLVELLQLGVSTLEGEKWAKRRRLITPAFHLDKLKGMMPGFSTSCNSLINRWENLLGSKEVIEVDVSEEFQNLAGDIISRTAFGSSFEDGKRIFQLQNEQAVLVLEAYHGTYIPGFRYVPTKKNKKRYSLDNEIKAILRNMIHRKEGAIKKCTPVNDDLLGLLLKCKDESDNDLTIDEVIEECKLFYFAGKETTANLLTWTLILLSIHSDWQDKARKEVLDVCGRKTPDFETIGRLKIVSWILNEVLRLYPPVTALFRHTRRETIIGGMSIPAGVDFYLPILLLHHDREYWGENAEEFDPERFSQGISKASIDQNTFYPFGWGPRICLGQNFAMIEAKMALALVLQHFWFELSPAYLHAPFVVITLQPQHGAPILLHRLS 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 901436 903338 - Bma018560.1 Bma04g00114 80483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00114 511 Gene3D Cytochrome P450 68 511 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00114 511 PANTHER CYTOCHROME P450 FAMILY MEMBER 3 507 - -
Bma04g00114 511 SUPERFAMILY Cytochrome P450 78 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00114 511 Pfam Cytochrome P450 84 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00114 511 PRINTS P450 superfamily signature 449 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00114 511 PRINTS P450 superfamily signature 372 383 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00114 511 PRINTS P450 superfamily signature 458 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00114 511 PRINTS P450 superfamily signature 320 337 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00114 511 PRINTS E-class P450 group I signature 204 222 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00114 511 PRINTS E-class P450 group I signature 458 481 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00114 511 PRINTS E-class P450 group I signature 309 326 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00114 511 PRINTS E-class P450 group I signature 89 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00114 511 PRINTS E-class P450 group I signature 412 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00114 511 PRINTS E-class P450 group I signature 329 355 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00114 511 PRINTS E-class P450 group I signature 448 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00114 511 PANTHER CYTOCHROME P450 72A15-LIKE 3 507 - -
Bma04g00114 511 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 451 460 IPR017972 GO:0005506|GO:0016705
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00114 - - - tcc:18603166 685.641
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02310 Bma-Chr1:80650793 Bma04g00114 Bma-Chr4:901436 5.09E-132 dispersed
Bma04g00114 Bma-Chr4:901436 Bma11g00605 Bma-Chr11:9026331 8.86E-173 dispersed
Bma04g00204 Bma-Chr4:1785399 Bma04g00114 Bma-Chr4:901436 2.24E-96 dispersed
Bma10g00685 Bma-Chr10:10382896 Bma04g00114 Bma-Chr4:901436 5.03E-42 dispersed
Bma11g00481 Bma-Chr11:5971416 Bma04g00114 Bma-Chr4:901436 4.95E-92 dispersed
Bma04g00114 Bma-Chr4:901436 Bma07g01122 Bma-Chr7:44850186 2.74E-160 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g158 Blo01g01555 . . Bda03g00127 . . Bma04g00114 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000139 5 6 8 7 5 3 1 6 3 7 6 6 4 7 7 8 6 11 1 7 4 7 6 8 8 7 6 10 9 22 201
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00114 Bma_Chr04 FPKM 9.437696 8.746945 22.050756 20.87726 31.422644 34.029816 33.020439 15.729702 15.652362 15.905154