Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00115 ATGGAACGTACCAAGTACGAAGCTTCAGAAGCTGGCGAAATAAGCTTGTCGGAAAAGAAAACGGCGAACAGAGGCGAAGTGGTAGTAGAGATTCCGACAGAAATAGAGATTTCTTCGAAGCCTATAATAGAGTCTGAAAAGGCAAACCAGTCTGCATCAAAACCCAGAGAAGAACCTAGTGTAGATTCTCCTTCCCGAGCATCAACAGAGTTAAGCCCTCATTTAACAAAGCCGATGCCGATTAGCCCCAGTTCGCAGGAGCAGTATAGGTACCCTCTGAGCTCGAATAAACCTCCGAAGATTCCTGACTGCAATGAAACAATTATCCGAAAAAGGTCCCTGTCAAGGTCTGTCTACTCTAAACCAAAATCAAGATTTGGGGAAGAACCTTATCGTATCAATTCCAACATGTTTGAAGAAAATTATGTAACCTCGCATGAACGAGTTGGTGCCAATTCCCCGCATGGATACTCCTTTAATCAGACTTCCCCTGGTAACAAATCTCAACCCACTGCAGTAACCCCAAAAACACCATTAATGGCCTTCTCAGGCCTTCTGAATGATTACGGCGATGAGGAGGAGATATTCAAGAAAGTCGAGTTGAATAAAGAGAAGCACAAGCGACTGAGACCGAAGATTATAGTTGAATGGGTTGGAGTTTTATTCATTGTGAGTTGCTTAATAGCGAGTTTAACGTATCAGCCATTGAAAAGGTCAGTGTTTTGGGGTTTAGTGAGCTGGAAATGGTGTCTGTTGATAATAGTCACATTCTGTGGTCTTCTGATTACTACTTGGTTTATGCACTTCATTGTTTTCTTGATTGAGATGAACTTTTTGCTGAGGAAGAAGGTCCTGTATTTCGTCCATGGGTTGAAGAAGACTGTCCAAGTTACCATATGGCTGGCTCTTGTTCTTCTTACATGGATGCTCTTGTTTGATCAACACGAAGCTGTTTACCGGTCGAAAACTACCAATCTAATGTTGCACGATGTTACAATGACTCTAGCTTCTCTTCTGATTGGAGCATTTCTATGGCTTCTGAAAACTCTCTTTCTGAAAATCCTGGCTTCGAAATTCCACGTCAACCAATTTTTTGATCGAATTCAAGAAGCAATCTTTCATCAATATGTTCTGCAGACCCTCGCAGGGCCTCCTCTTATCGAGGAAGCTGGGAGGGTCAGGCGATTATCGAGCATTGGTCAGATGAGTATCAAAAGGTCGAAGAATAATGGGAAGAAAAAGAAGGAGGTGATTGATATGGGAAAGCTTCACAAGATGAAGCAGGAAAAGGTTTCAGCTTGGACCATGAAAGTGTTGGTAGACGCAGTTACTAATTCCCAACTTTCTACAATTTCCATGGCGCTGGAAGAAAGTTTCCAAGATAGAGAAGATGAGCAACTAGACAGTGAAATTACCAACGAAATGGAGGCAATTGCAGCAGCGTTTAAGGTATTCAGAAATGTTGCTCAGCCTGGCAGCAAGCGCATCGAAGAGGACGATCTACTCAGATTCATGATCAAGGAAGAAGTGGAGCTTGTATTTCAATTATTTGACGGATCGGAGACGAGAAAGATAGACAAAATATGTCTTACCAATTGGGTGGTGAAGGTTTACCAAGAGAGAAAAACTCTAGCACATGCTCTGAACGACACGAAAACGGCCGTGAAACAATTGAACAAGCTCGTGACGGGAATCGTAATTGTAGTGACCATCGTGATTTGGCTTTTATTGTTAGAAATAACGACCTCAAAAGTACTTGTTTTCCTCGCTTCTCAGCTCGTCGTGGCTGTTTTCATATTCGGCAACACCTGCAAAACCATTTTCGAGGCTTTGATTTTTGTCTTCGTTATGCATCCGTTCGACGTCGGTGATCGATGCGTCATCGACGGTCATCCGATGATGGTGGAAGAAATGAACATCCTAACAACAGTTTTCTTGAAACTAAACAAGGAGAAGGTGTATTATCCAAACTCGGTATTGGCTACAAAGCCTATAGGCAATTATTTCAGGAGCCCAAACATGTCCGACGCAGTGCAATTCACGATCGATTTCATGACGCCATTAGAGAGGATCGGAGCTATGAAGGAGAAGATAAAGAGTTATTTGGAGAAAAATCCAACGCAGTGGCAACCCAGCCATAACGTGGTGGTGAAGGAGATTGAAAACGTGAATGAGATCAAGATTGCTCTGAATGTGAATCACACGATGAACTTCCAAGACTGGGTCGAGAAGAACAGGAGAAGAAGTGAGCTTGTGATGGAGTTGAAGAAGATATTCCAAGAACTGAACATCAAGTATAATCTTTTGCACCAGAGAGTTCATCTCTGCAACGTCGAAGACAACTGCTTTTCGACCCACTGA 2361 42.74 MERTKYEASEAGEISLSEKKTANRGEVVVEIPTEIEISSKPIIESEKANQSASKPREEPSVDSPSRASTELSPHLTKPMPISPSSQEQYRYPLSSNKPPKIPDCNETIIRKRSLSRSVYSKPKSRFGEEPYRINSNMFEENYVTSHERVGANSPHGYSFNQTSPGNKSQPTAVTPKTPLMAFSGLLNDYGDEEEIFKKVELNKEKHKRLRPKIIVEWVGVLFIVSCLIASLTYQPLKRSVFWGLVSWKWCLLIIVTFCGLLITTWFMHFIVFLIEMNFLLRKKVLYFVHGLKKTVQVTIWLALVLLTWMLLFDQHEAVYRSKTTNLMLHDVTMTLASLLIGAFLWLLKTLFLKILASKFHVNQFFDRIQEAIFHQYVLQTLAGPPLIEEAGRVRRLSSIGQMSIKRSKNNGKKKKEVIDMGKLHKMKQEKVSAWTMKVLVDAVTNSQLSTISMALEESFQDREDEQLDSEITNEMEAIAAAFKVFRNVAQPGSKRIEEDDLLRFMIKEEVELVFQLFDGSETRKIDKICLTNWVVKVYQERKTLAHALNDTKTAVKQLNKLVTGIVIVVTIVIWLLLLEITTSKVLVFLASQLVVAVFIFGNTCKTIFEALIFVFVMHPFDVGDRCVIDGHPMMVEEMNILTTVFLKLNKEKVYYPNSVLATKPIGNYFRSPNMSDAVQFTIDFMTPLERIGAMKEKIKSYLEKNPTQWQPSHNVVVKEIENVNEIKIALNVNHTMNFQDWVEKNRRRSELVMELKKIFQELNIKYNLLHQRVHLCNVEDNCFSTH 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 925819 928504 - Bma018561.1 Bma04g00115 80484

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00115 786 MobiDBLite consensus disorder prediction 43 72 - -
Bma04g00115 786 MobiDBLite consensus disorder prediction 1 104 - -
Bma04g00115 786 MobiDBLite consensus disorder prediction 153 172 - -
Bma04g00115 786 MobiDBLite consensus disorder prediction 78 93 - -
Bma04g00115 786 MobiDBLite consensus disorder prediction 1 25 - -
Bma04g00115 786 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 9 17 776 - -
Bma04g00115 786 SUPERFAMILY Sm-like ribonucleoproteins 609 668 IPR010920 -
Bma04g00115 786 PIRSF Memb_At2g17000 16 784 IPR016688 -
Bma04g00115 786 Pfam Mechanosensitive ion channel 560 765 IPR006685 GO:0016020|GO:0055085
Bma04g00115 786 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 17 776 IPR016688 -
Bma04g00115 786 Gene3D - 619 668 IPR023408 -
Bma04g00115 786 MobiDBLite consensus disorder prediction 154 172 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00115 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - pvy:116117532 894.419
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00115 Bma-Chr4:925819 Bma11g00595 Bma-Chr11:8941397 0 dispersed
Bma04g00115 Bma-Chr4:925819 Bma07g00558 Bma-Chr7:7598910 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma06g01199 . 109 558 Mechanosensitive Ion Channel Family AT4G00290 57.0 4.0e-130 461.8
Bma06g01198 . 191 453 Mechanosensitive Ion Channel Family AT4G00290 55.8 1.6e-78 290.4
Bma02g00115 . 256 813 Mechanosensitive Ion Channel Family AT5G10490 58.3 3.5e-169 592.0
Bma01g01375 . 11 511 Mechanosensitive Ion Channel Family AT5G10490 59.5 3.5e-153 538.9
Bma02g00115 . 257 796 Mechanosensitive Ion Channel Family AT1G58200 55.7 4.8e-158 555.1
Bma01g01375 . 11 518 Mechanosensitive Ion Channel Family AT1G58200 57.6 4.8e-150 528.5
Bma12g00910 . 63 921 Mechanosensitive Ion Channel Family AT1G53470 54.2 2.9e-248 855.1
Bma03g00619 . 73 896 Mechanosensitive Ion Channel Family AT1G53470 55.9 6.0e-246 847.4
Bma12g00910 . 63 924 Mechanosensitive Ion Channel Family AT3G14810 52.6 3.0e-234 808.5
Bma03g00619 . 73 902 Mechanosensitive Ion Channel Family AT3G14810 52.6 2.1e-227 785.8
Bma12g00910 . 63 922 Mechanosensitive Ion Channel Family AT1G78610 60.9 2.1e-280 961.8
Bma03g00619 . 58 901 Mechanosensitive Ion Channel Family AT1G78610 56.7 2.5e-260 895.2
Bma12g00910 . 228 918 Mechanosensitive Ion Channel Family AT2G17000 59.8 3.3e-225 778.5
Bma03g00619 . 217 895 Mechanosensitive Ion Channel Family AT2G17000 58.9 9.6e-225 776.9
Bma04g00115 . 16 775 Mechanosensitive Ion Channel Family AT5G19520 50.2 1.4e-195 679.9
Bma04g00115 . 61 775 Mechanosensitive Ion Channel Family AT5G12080 56.1 1.2e-210 729.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002739 1 4 1 1 1 2 2 2 2 3 2 2 1 3 3 1 2 3 1 2 3 1 0 2 2 2 1 6 1 0 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00115 Bma_Chr04 FPKM 2.551813 2.176751 4.109104 4.024178 32.8204 31.060812 31.590738 3.494477 2.930025 3.934517