Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00115 ATGGAACGTACCAAGTACGAAGCTTCAGAAGCTGGCGAAATAAGCTTGTCGGAAAAGAAAACGGCGAACAGAGGCGAAGTGGTAGTAGAGATTCCGACAGAAATAGAGATTTCTTCGAAGCCTATAATAGAGTCTGAAAAGGCAAACCAGTCTGCATCAAAACCCAGAGAAGAACCTAGTGTAGATTCTCCTTCCCGAGCATCAACAGAGTTAAGCCCTCATTTAACAAAGCCGATGCCGATTAGCCCCAGTTCGCAGGAGCAGTATAGGTACCCTCTGAGCTCGAATAAACCTCCGAAGATTCCTGACTGCAATGAAACAATTATCCGAAAAAGGTCCCTGTCAAGGTCTGTCTACTCTAAACCAAAATCAAGATTTGGGGAAGAACCTTATCGTATCAATTCCAACATGTTTGAAGAAAATTATGTAACCTCGCATGAACGAGTTGGTGCCAATTCCCCGCATGGATACTCCTTTAATCAGACTTCCCCTGGTAACAAATCTCAACCCACTGCAGTAACCCCAAAAACACCATTAATGGCCTTCTCAGGCCTTCTGAATGATTACGGCGATGAGGAGGAGATATTCAAGAAAGTCGAGTTGAATAAAGAGAAGCACAAGCGACTGAGACCGAAGATTATAGTTGAATGGGTTGGAGTTTTATTCATTGTGAGTTGCTTAATAGCGAGTTTAACGTATCAGCCATTGAAAAGGTCAGTGTTTTGGGGTTTAGTGAGCTGGAAATGGTGTCTGTTGATAATAGTCACATTCTGTGGTCTTCTGATTACTACTTGGTTTATGCACTTCATTGTTTTCTTGATTGAGATGAACTTTTTGCTGAGGAAGAAGGTCCTGTATTTCGTCCATGGGTTGAAGAAGACTGTCCAAGTTACCATATGGCTGGCTCTTGTTCTTCTTACATGGATGCTCTTGTTTGATCAACACGAAGCTGTTTACCGGTCGAAAACTACCAATCTAATGTTGCACGATGTTACAATGACTCTAGCTTCTCTTCTGATTGGAGCATTTCTATGGCTTCTGAAAACTCTCTTTCTGAAAATCCTGGCTTCGAAATTCCACGTCAACCAATTTTTTGATCGAATTCAAGAAGCAATCTTTCATCAATATGTTCTGCAGACCCTCGCAGGGCCTCCTCTTATCGAGGAAGCTGGGAGGGTCAGGCGATTATCGAGCATTGGTCAGATGAGTATCAAAAGGTCGAAGAATAATGGGAAGAAAAAGAAGGAGGTGATTGATATGGGAAAGCTTCACAAGATGAAGCAGGAAAAGGTTTCAGCTTGGACCATGAAAGTGTTGGTAGACGCAGTTACTAATTCCCAACTTTCTACAATTTCCATGGCGCTGGAAGAAAGTTTCCAAGATAGAGAAGATGAGCAACTAGACAGTGAAATTACCAACGAAATGGAGGCAATTGCAGCAGCGTTTAAGGTATTCAGAAATGTTGCTCAGCCTGGCAGCAAGCGCATCGAAGAGGACGATCTACTCAGATTCATGATCAAGGAAGAAGTGGAGCTTGTATTTCAATTATTTGACGGATCGGAGACGAGAAAGATAGACAAAATATGTCTTACCAATTGGGTGGTGAAGGTTTACCAAGAGAGAAAAACTCTAGCACATGCTCTGAACGACACGAAAACGGCCGTGAAACAATTGAACAAGCTCGTGACGGGAATCGTAATTGTAGTGACCATCGTGATTTGGCTTTTATTGTTAGAAATAACGACCTCAAAAGTACTTGTTTTCCTCGCTTCTCAGCTCGTCGTGGCTGTTTTCATATTCGGCAACACCTGCAAAACCATTTTCGAGGCTTTGATTTTTGTCTTCGTTATGCATCCGTTCGACGTCGGTGATCGATGCGTCATCGACGGTCATCCGATGATGGTGGAAGAAATGAACATCCTAACAACAGTTTTCTTGAAACTAAACAAGGAGAAGGTGTATTATCCAAACTCGGTATTGGCTACAAAGCCTATAGGCAATTATTTCAGGAGCCCAAACATGTCCGACGCAGTGCAATTCACGATCGATTTCATGACGCCATTAGAGAGGATCGGAGCTATGAAGGAGAAGATAAAGAGTTATTTGGAGAAAAATCCAACGCAGTGGCAACCCAGCCATAACGTGGTGGTGAAGGAGATTGAAAACGTGAATGAGATCAAGATTGCTCTGAATGTGAATCACACGATGAACTTCCAAGACTGGGTCGAGAAGAACAGGAGAAGAAGTGAGCTTGTGATGGAGTTGAAGAAGATATTCCAAGAACTGAACATCAAGTATAATCTTTTGCACCAGAGAGTTCATCTCTGCAACGTCGAAGACAACTGCTTTTCGACCCACTGA 2361 42.74 MERTKYEASEAGEISLSEKKTANRGEVVVEIPTEIEISSKPIIESEKANQSASKPREEPSVDSPSRASTELSPHLTKPMPISPSSQEQYRYPLSSNKPPKIPDCNETIIRKRSLSRSVYSKPKSRFGEEPYRINSNMFEENYVTSHERVGANSPHGYSFNQTSPGNKSQPTAVTPKTPLMAFSGLLNDYGDEEEIFKKVELNKEKHKRLRPKIIVEWVGVLFIVSCLIASLTYQPLKRSVFWGLVSWKWCLLIIVTFCGLLITTWFMHFIVFLIEMNFLLRKKVLYFVHGLKKTVQVTIWLALVLLTWMLLFDQHEAVYRSKTTNLMLHDVTMTLASLLIGAFLWLLKTLFLKILASKFHVNQFFDRIQEAIFHQYVLQTLAGPPLIEEAGRVRRLSSIGQMSIKRSKNNGKKKKEVIDMGKLHKMKQEKVSAWTMKVLVDAVTNSQLSTISMALEESFQDREDEQLDSEITNEMEAIAAAFKVFRNVAQPGSKRIEEDDLLRFMIKEEVELVFQLFDGSETRKIDKICLTNWVVKVYQERKTLAHALNDTKTAVKQLNKLVTGIVIVVTIVIWLLLLEITTSKVLVFLASQLVVAVFIFGNTCKTIFEALIFVFVMHPFDVGDRCVIDGHPMMVEEMNILTTVFLKLNKEKVYYPNSVLATKPIGNYFRSPNMSDAVQFTIDFMTPLERIGAMKEKIKSYLEKNPTQWQPSHNVVVKEIENVNEIKIALNVNHTMNFQDWVEKNRRRSELVMELKKIFQELNIKYNLLHQRVHLCNVEDNCFSTH 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 925819 928504 - Bma018561.1 Bma04g00115 80484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00115 786 MobiDBLite consensus disorder prediction 43 72 - -
Bma04g00115 786 MobiDBLite consensus disorder prediction 1 104 - -
Bma04g00115 786 MobiDBLite consensus disorder prediction 153 172 - -
Bma04g00115 786 MobiDBLite consensus disorder prediction 78 93 - -
Bma04g00115 786 MobiDBLite consensus disorder prediction 1 25 - -
Bma04g00115 786 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 9 17 776 - -
Bma04g00115 786 SUPERFAMILY Sm-like ribonucleoproteins 609 668 IPR010920 -
Bma04g00115 786 PIRSF Memb_At2g17000 16 784 IPR016688 -
Bma04g00115 786 Pfam Mechanosensitive ion channel 560 765 IPR006685 GO:0016020|GO:0055085
Bma04g00115 786 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 17 776 IPR016688 -
Bma04g00115 786 Gene3D - 619 668 IPR023408 -
Bma04g00115 786 MobiDBLite consensus disorder prediction 154 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00115 Bma-Chr4:925819 Bma11g00595 Bma-Chr11:8941397 0 dispersed
Bma04g00115 Bma-Chr4:925819 Bma07g00558 Bma-Chr7:7598910 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00115 K22048 - pvy:116117532 894.419