Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00117 ATGGGAAGTGTTCCTGCGACGGTCGTTTGTGTGAAACAAGTAAAGCAAGACGTTGAAGATGATTGGGACGAAACCATGCCATTGCCTGGCGACATAATCGAAGGCTGCTCCAGTTGCGAGGCGAAAGGTCTGTTTATCCCCACCAAGTTAAAATCCGAGCTTAGTTCACAGCTTGGTACTATTAACCAGCAATATGAGGCTGTCTGGTTGAAAGTAAGAAGAGGAAACAACACGCTTAAGCTTCGAGCACGGATCGTGCAAGAGAAGTCTTCGATTCTTCAGCGAAAATTCACGATCCGAGCTGCCACCGATGATCGACATGTGGCTATACTTGGTGATCTTACTCTAGATCAATGCAGTGAGTTGCAGGAAATGAGCAGAAGAGTGATGAACATAGACGACAAGGAGTTCGAGAAGAAGGGAATTAACTATGATTGGAGAATGAAAATGGAGAAATACCTCCCAGATCAATCTTCTTCAGTCATCAGTTCAATTCTGTTCGTACCTCTGAAAAGTGAGCATTCCATTGGAGCCACTACAGCCAGGTGCATTGCTTGGTTTACGGCTGCCGTTACCTCCGGTGCCCCTCTTGTCTTCGTCAACATCCAGTCTGAGCAAATCATCTCTTCTGAGAAGAGTAATCCAGCAGGAAAAGAATCATGGAAGTGTCGACAGCAGAAAAACGCAAATGTGCATGTAGTGCAGGGGATAAGATTATGGTTCCTACCGGGAGTTGCAGAAGTTCAGCTCCAACTGATACCCAAATTCGGAGAAGGACGATTCGGAATGGACATCAAAAGAACCGAAGAGGTAAATGAACATCAAATCTCGACTGATTTGAATATCAACTCTTACCTCAATCACGAAAATTTCTAG 876 44.86 MGSVPATVVCVKQVKQDVEDDWDETMPLPGDIIEGCSSCEAKGLFIPTKLKSELSSQLGTINQQYEAVWLKVRRGNNTLKLRARIVQEKSSILQRKFTIRAATDDRHVAILGDLTLDQCSELQEMSRRVMNIDDKEFEKKGINYDWRMKMEKYLPDQSSSVISSILFVPLKSEHSIGATTARCIAWFTAAVTSGAPLVFVNIQSEQIISSEKSNPAGKESWKCRQQKNANVHVVQGIRLWFLPGVAEVQLQLIPKFGEGRFGMDIKRTEEVNEHQISTDLNINSYLNHENF 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 934851 935924 + Bma018563.1 Bma04g00117 80486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00117 291 PANTHER PDZ DOMAIN-CONTAINING PROTEIN-RELATED 5 270 - -
Bma04g00117 291 PANTHER OS02G0717600 PROTEIN 5 270 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00117 - - - csv:105435315 357.066
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00117 Bma-Chr4:934851 Bma07g01414 Bma-Chr7:49920288 3.79E-15 dispersed
Bma04g00117 Bma-Chr4:934851 Bma07g01411 Bma-Chr7:49875929 3.68E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g140 . Blo12g01025 . Bda03g00132 . . Bma04g00117 . . . Cma01g01711 . . . . . . . . . . . . . Cla05g01858 Cam05g1986 Cec05g1998 Cco05g2055 Clacu05g1977 Cmu05g1858 Cre05g1983 . . . . Lsi04g01399 . . . . . . . . . . . Sed13g1892 Cmo01g01801 . . . Car01g01328 . . Cpe02g00282 Bhi09g03095 Tan01g4589 Cmetu07g2158 . Hepe01g1908 Mch11g0441 . . . . . . . . . . . Cme07g00194
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011761 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00117 Bma_Chr04 FPKM 6.821395 5.860015 5.734279 6.821848 7.197304 5.890672 5.797996 8.158071 7.980712 10.581456