Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00119 GCGATCAAGAAAGAGAAGATGGATTTCAGAATCATGGGATTGGAGTCTCCTTTCTTCTCCACTCTCCAGCACATGATCGACGCCGGCGACGACGCTGATAAATCGTTCAATGCTCCAACCAAATGCTATGTTCGTGATGCCAAGGCCGTCGCCTCTACTCCGGCGGATATCAAGGAGTATTCCAACTCCTACGTCTTTATCATCGACATGCCGGGGCTGAAATCTGGAGACATCAAGGTTCAGGTTGAGGAAGGTAATGTGCTGCTGATCTCCGGCGAGAGGAAGAGGGAGGAAGAGAAAGAGGGAGCCAAGTACGTGAGGATGGAGAGGAGGATCGGCAAGTTCATGAGGAAGTTTGTGCTGCCGGAGAACGCAAATACTGACAAAATCTCGGCGGTTAGCCAGGATGGAGTTCTGACTGTGACGGTGGAGAAGCTGCCTCCACCGGAGCCCAAGAAGCCGAAGACTATTGAGGTGAAGATTGCTTAG 489 51.53 AIKKEKMDFRIMGLESPFFSTLQHMIDAGDDADKSFNAPTKCYVRDAKAVASTPADIKEYSNSYVFIIDMPGLKSGDIKVQVEEGNVLLISGERKREEEKEGAKYVRMERRIGKFMRKFVLPENANTDKISAVSQDGVLTVTVEKLPPPEPKKPKTIEVKIA 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 956479 956967 + Bma018566.1 Bma04g00119 80488

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00119 162 Pfam Hsp20/alpha crystallin family 56 160 IPR002068 -
Bma04g00119 162 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 14 161 - -
Bma04g00119 162 PANTHER 18.0 KDA CLASS II HEAT SHOCK PROTEIN 14 161 - -
Bma04g00119 162 Gene3D - 10 161 IPR008978 -
Bma04g00119 162 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 46 162 IPR002068 -
Bma04g00119 162 SUPERFAMILY HSP20-like chaperones 20 154 IPR008978 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00119 K13993 HSP20; HSP20 family protein - vvi:100245734 259.996
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g00343 Bma04g00119 CCT
Bma01g02202 Bma04g00119 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00343 Bma-Chr2:5547897 Bma04g00119 Bma-Chr4:956479 5.57E-60 dispersed
Bma02g00538 Bma-Chr2:10570393 Bma04g00119 Bma-Chr4:956479 2.71E-57 dispersed
Bma04g00119 Bma-Chr4:956479 Bma05g00455 Bma-Chr5:15400873 9.97E-20 dispersed
Bma01g02202 Bma-Chr1:78938120 Bma04g00119 Bma-Chr4:956479 1.24E-77 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g133 . . . Bda03g00134 . . Bma04g00119 Bma01g02202 . . . . Car09g00498 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe04g00117 . Bma02g00343 . . . Cma09g00570 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001297 3 2 4 4 3 2 2 2 2 1 1 2 3 2 2 3 2 3 3 2 1 2 1 3 2 2 3 3 2 7 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00119 Bma_Chr04 FPKM 16.940475 18.558758 17.84564 14.235932 23.807287 25.003107 23.331999 27.658735 26.934797 23.731483