Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00124 ATGAGTAAAGACGACGATGATCCAGAGAAGGGAGAGTTTGTATCAAGGCTAGGATCAGCTGGACCGCACTCGCACTCGCACTCGCACTCGCACTCATGGTTGACAGACTTTCACCGTGACCTGGTAGCGGGGGCGGTGATGGGCGGAGTAGTGCACACGATTGTTGCCCCAATTGAGAGGGCGAAGCTTCTTTTACAGACTCAAGAGAGCAACTTGGCGATTGTTGGAGTTGGGCGAAGAAGATTCAAGGGAATGTTTGATTGTATTTTAAGAACAGTCCGAGAAGAAGGCATTCTCTCTTTGTGGAGAGGCAATGGTAGTAGCGTTCTGCGTTATTATCCATCTGTCGCCCTCAATTTTTCTCTCAAGGATCTTTATCGGAATATGCTAAGAAATGGAAACTCTGAAAATTATCATTTTTGGTCCGGTCCTCTGGCTAACTTTGTGGCTGGTGCCGCTGCTGGTTGCACCACATTGATTTTAATCTATCCTCTTGACATTGCACATACCAGACTAGCTGCTGACATTGGAAGAACCGATGCCCGTCAGTTTCGAGGCATTTACCATTTCCTCACGACAATACACAAAAAGGATGGAGTCCGAGGAATTTACAGAGGCCTTCCTGCCTCCATACACGGGATGATAGTCCACAGGGGCCTTTATTTCGGAGGTTTCGATACCATGAAAGAGATTTTGTCAGAAAATTGCGAAACTGACTTGCCACTGTGGAAGCGATGGATTGTGGCTCAGGGAGTTACGACCTCTGCAGGGCTACTATCGTATCCACTGGACACTGTTCGAAGGCGAATGATGATGCAGTCTGGTTCGGAACGGCCTGTGTACCATAGCACACTGGACTGCTGGAGGAAAATATATCGGACCGAAGGGGTGGCCTCATTTTATCGTGGGGCTGTTTCGAATATGTTTAGGAGCACGGGGGCTGCTGCGATATTGGTTTTGTACGATGAGGTAAAGAAGTTCATGGACTGGGGTGGATTTTGA 1002 48.1 MSKDDDDPEKGEFVSRLGSAGPHSHSHSHSHSWLTDFHRDLVAGAVMGGVVHTIVAPIERAKLLLQTQESNLAIVGVGRRRFKGMFDCILRTVREEGILSLWRGNGSSVLRYYPSVALNFSLKDLYRNMLRNGNSENYHFWSGPLANFVAGAAAGCTTLILIYPLDIAHTRLAADIGRTDARQFRGIYHFLTTIHKKDGVRGIYRGLPASIHGMIVHRGLYFGGFDTMKEILSENCETDLPLWKRWIVAQGVTTSAGLLSYPLDTVRRRMMMQSGSERPVYHSTLDCWRKIYRTEGVASFYRGAVSNMFRSTGAAAILVLYDEVKKFMDWGGF 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 990477 992748 - Bma018572.1 Bma04g00124 80493

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00124 333 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 32 332 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Bma04g00124 333 Pfam Mitochondrial carrier protein 37 132 IPR018108 -
Bma04g00124 333 Pfam Mitochondrial carrier protein 141 234 IPR018108 -
Bma04g00124 333 Pfam Mitochondrial carrier protein 239 328 IPR018108 -
Bma04g00124 333 Gene3D Mitochondrial carrier domain 39 329 IPR023395 -
Bma04g00124 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 35 129 IPR018108 -
Bma04g00124 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 142 231 IPR018108 -
Bma04g00124 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 244 327 IPR018108 -
Bma04g00124 333 SUPERFAMILY Mitochondrial carrier 36 323 IPR023395 -
Bma04g00124 333 PANTHER ADP,ATP CARRIER PROTEIN-RELATED 32 332 - -
Bma04g00124 333 PRINTS Mitochondrial carrier protein signature 157 175 IPR002067 GO:0055085
Bma04g00124 333 PRINTS Mitochondrial carrier protein signature 40 53 IPR002067 GO:0055085
Bma04g00124 333 PRINTS Mitochondrial carrier protein signature 104 124 IPR002067 GO:0055085
Bma04g00124 333 PRINTS Mitochondrial carrier protein signature 249 271 IPR002067 GO:0055085
Bma04g00124 333 PRINTS Mitochondrial carrier protein signature 53 67 IPR002067 GO:0055085
Bma04g00124 333 PRINTS Mitochondrial carrier protein signature 204 222 IPR002067 GO:0055085
Bma04g00124 333 MobiDBLite consensus disorder prediction 1 29 - -
Bma04g00124 333 PRINTS Adenine nucleotide translocator signature 37 49 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Bma04g00124 333 PRINTS Adenine nucleotide translocator signature 82 103 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Bma04g00124 333 PRINTS Adenine nucleotide translocator signature 115 127 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Bma04g00124 333 PRINTS Adenine nucleotide translocator signature 142 155 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Bma04g00124 333 PRINTS Adenine nucleotide translocator signature 245 261 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00124 K05863 SLC25A4S, ANT; solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31 - zju:107420065 548.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00124 Bma-Chr4:990477 Bma15g00461 Bma-Chr15:5042597 9.59E-64 dispersed
Bma01g02211 Bma-Chr1:79033367 Bma04g00124 Bma-Chr4:990477 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g90 Blo01g01462 . . . . . Bma04g00124 . . Cmo12g00580 . . . . . Cpe07g00561 . . . . . . . . . . . . . . . . . . Cone20ag0273 . . . . . . . . . . . . . . . . Cma12g00641 . Car05g00075 Cpe11g00070 . . . . . . . . . . . . . . . Lsi08g01591 . Chy03g01656 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007060 2 1 1 2 2 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00124 Bma_Chr04 FPKM 25.652779 25.458952 28.747118 32.48027 33.735756 24.426779 33.001953 39.108711 40.995872 47.378738