Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00131 ATGGCTTCCAAGCTGGTCCAATTGCAATCTAAGGCCACTCAAGCTTCACAGTTCGTGGCTAAGCATGGTTGTGTCTATTACAAGCAGCTATTGGAGCAGAACAAGCAGTATATCCAAGAACCACCTACAATAGAGAAATGCGATCTTTTGGCGAAGCAAGTTGTTCTACACCCTCTTCCTGGTCGATATGAAGCATTTTGGAAGGAAATGGATTGCATGAAGCAGCTTTGGAAGAATAGGCAAGAACTGAGGGTTGAGGATGCTGGCATTGCTGCATTGTTTGGATTGGAGTGTTTTGCATGGTTTTGTGCTGGTGAGATTGTTGGCCGAGGATTTACAATCACTGGTTACCATGTATAA 360 44.17 MASKLVQLQSKATQASQFVAKHGCVYYKQLLEQNKQYIQEPPTIEKCDLLAKQVVLHPLPGRYEAFWKEMDCMKQLWKNRQELRVEDAGIAALFGLECFAWFCAGEIVGRGFTITGYHV 119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1027957 1028680 + Bma018577.1 Bma04g00131 80500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00131 119 PANTHER ATPASE, F0 COMPLEX, SUBUNIT G-RELATED 1 119 - -
Bma04g00131 119 Pfam Mitochondrial ATP synthase g subunit 15 118 IPR006808 GO:0000276|GO:0015078|GO:0015986
Bma04g00131 119 PANTHER ATP SYNTHASE SUBUNIT 1 119 IPR006808 GO:0000276|GO:0015078|GO:0015986
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00131 K02140 ATPeFG, ATP5L, ATP20; F-type H+-transporting ATPase subunit g - vvi:100267911 219.164
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00131 Bma-Chr4:1027957 Bma06g00845 Bma-Chr6:42748623 6.05E-65 dispersed
Bma04g00131 Bma-Chr4:1027957 Bma01g00224 Bma-Chr1:1969900 6.73E-68 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g61 . Blo12g01009 . Bda03g00149 . . Bma04g00131 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe04g00132 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002032 3 2 3 3 3 1 3 1 1 2 2 2 3 1 2 4 2 3 3 1 2 2 2 1 2 1 1 5 2 2 65