Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00142 ATGCTTGAAGTTTACCGGAATAGTTCAATTGACTGGAAGCCCTCCCCAGTTGTTGCCCTCGCCACCAGCGCCGATGACTCTCAAGTCGCCGCTGCTCGAGAAGACGGTTCGCTCGAGATTTGGCTCGTGTCTCCCGGCTCCGTGGGCTGGCACCATCAGATTACAATTCATGGAAACCCTAATTGTAGGATTTCATCTCTTATTTGGTGTCGCGGCTGTTTCAAAGGCATGAGTTATGGTCGCTTATATTCGTCCAGCATGGATGGGTCCGTTTCCCAATGGGATCTTTGTGATTTGAAGCAGAAGACTGTGCTAGATTCTATTGGCGTCTCTATCTGGCAGATGGCTGTGGCTCCTTGTAGCAATCAGGCACTTAATGCTGTGCCCAAGACCCAAAATATGGAAAATGGAGGTTCAAATGAAAATGATACCAATTTTAAAGATTCCAGTGAAAGTGAAGATGAAGCTGACTTATCGGAGCCTGATCACCTATCAGCTAGTGAAAATCTACTTGTAGCAATAGCTTGTGACGATGGTAGTGTTCGAATGTACAGTATCTCTGACCTGGATGGGTTTGTTTATACCAGATCACTGCCTAGGGTCAGTGGTCGTGTTTTAAGTGTCACATGGAGTCTTGATGCAGATATGATATATTCAGGCAGCAGTGATGGGTTTATTAGGTGCTGGAATAGTAGAAAGGGCCACGAGATCTACAGGATAACAGTAGGACTTGGAGGTTTGGGTTCTGGATCTGAACTTTGTGTTTGGTCATTGCTTTTCTTAAGATGTGGGACACTTGTAAGTGCTGACAGTAATGGAAGTGTTCAATTCTGGGACAGTCGTTATGGAACTCTTCTACAAGCACATTCTCTTCACAAGGGCGATGTTACTGCTCTGGCAACTGCACCCAGTCATAATAGGGTGTATTCTTCTGGTTCTGATGGACAGGTTGTTCTGTATAAGCTCTCAAGTGAAACAGTTGAATATGGCGATGACGAGTCTTCCTCTAAAGTGATGAAGAAATGGATCTATGTGGGTTATGTTCGAGCTCATACACATGATATTAGGGCTTTGACTGTAGCAGTACCAATCAGTAGAGATCCATTTCCAAAAGAAGAGGTGAAAAGAGTTCGGGGTAGAAAAAAGCCCATTTATTTTACATATGGTAAGTGGGCTCATTTTGGCGTTCCCATGCTAATATCCGGTGGTGATGACACAAAGCTCTTTGCTTATTCTGTGAAGGAGTTTACCAAATTTTCTCCTCATGATATTTGCCCTGCACCTCAAAGAGTTCCTATGCAACTCGTGCTCGATACAGTTTTCAATCAAACGCCATTGCTGCTTGTCCAAGCCTCCAATTGTTTGGATATCATGTGTATTCGTCCGAGAGGTGGTGCCTATCCTGAGATGGCTTGTGGAACTTCTGGCGCTCGTGTAAATGCCGAATTAGTTGCTCAAGTTAAGAGTAAGGGTTCTCGTAAGATCATTTGCAGCACTATTTCTAATTCAGGAAAGCTGTTTGCCTATTCTGACCACCGGAAACCCAGTCTATTTGAATTGAAGGGATCCAAAGTCGTCAAACATGCATGGACTGTTAATAAGAAGCAACTTCCTCGTGTACTGCCATTTGCTCATTCCATGGTCTTTAGCTTTGACTCTTCCCAATTGGTGATAGCAGGGCATGATAGATTGATATATGTTGTGGAAATTGGAAGTTTGGAAGTAATACATCGTTTCACACCATGCCAAGAACTAAAAGAGGAAGAACTTCCACCTAATGAACCTCCCATAACAAAAATGTTTACCAGTTCAGATGGACAGTGGTTAGCTGCAATTAATTGTCTTGGAGATATTTACATATTTAACTTGGAGCTACTAAGGCAGCATTGGTTTATTTCTAGGCTGGATGGTGCCTCTGTTACTGCTGCTGGGTTTCCTCAATGGAACAATAATGTGCTGGTGGTCACTACCTCTTCAAATCAGATTTATGCATTTGATGTTGAGGCCAAAAAGTTGGGAGATTGGTCACTTGGGCATCCAGATGCTCTTCCAAAGAGATTTCAAGAATTTCCGGGAGAAGTGATTGGTCTCTCGTTCCCTCATTCCACAAGTACTTCTGCTGTTATTGTATACAGTTCCAGGGCAATGTGCTTAGTGGATTTCGGATTATCTGTTGATGGAGATAATGAATGCAGTCACGATTTGGCTATGAAGAATTTAAAAAATATTTCAGTGAATGGAATACTAAAACGTAAGTTGAGCAATTTACAAACTGAGAATAAACTCTCTGGTAGAAAGAATTTTGAAATTTGCTCTTTTAGAGATCCTGTTTTATTTGTTGGACACCTATCCAAAAATTCGCTCTTGATCATAGACAAACCATGGTTGAACTTGGTTAAAAGTTTTGATAGCCAACCTGTGCACAGACATACATTTGGGACA 2442 42.34 MLEVYRNSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGSVGWHHQITIHGNPNCRISSLIWCRGCFKGMSYGRLYSSSMDGSVSQWDLCDLKQKTVLDSIGVSIWQMAVAPCSNQALNAVPKTQNMENGGSNENDTNFKDSSESEDEADLSEPDHLSASENLLVAIACDDGSVRMYSISDLDGFVYTRSLPRVSGRVLSVTWSLDADMIYSGSSDGFIRCWNSRKGHEIYRITVGLGGLGSGSELCVWSLLFLRCGTLVSADSNGSVQFWDSRYGTLLQAHSLHKGDVTALATAPSHNRVYSSGSDGQVVLYKLSSETVEYGDDESSSKVMKKWIYVGYVRAHTHDIRALTVAVPISRDPFPKEEVKRVRGRKKPIYFTYGKWAHFGVPMLISGGDDTKLFAYSVKEFTKFSPHDICPAPQRVPMQLVLDTVFNQTPLLLVQASNCLDIMCIRPRGGAYPEMACGTSGARVNAELVAQVKSKGSRKIICSTISNSGKLFAYSDHRKPSLFELKGSKVVKHAWTVNKKQLPRVLPFAHSMVFSFDSSQLVIAGHDRLIYVVEIGSLEVIHRFTPCQELKEEELPPNEPPITKMFTSSDGQWLAAINCLGDIYIFNLELLRQHWFISRLDGASVTAAGFPQWNNNVLVVTTSSNQIYAFDVEAKKLGDWSLGHPDALPKRFQEFPGEVIGLSFPHSTSTSAVIVYSSRAMCLVDFGLSVDGDNECSHDLAMKNLKNISVNGILKRKLSNLQTENKLSGRKNFEICSFRDPVLFVGHLSKNSLLIIDKPWLNLVKSFDSQPVHRHTFGT 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1203001 1208459 + Bma031088 Bma04g00142 80511

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00142 814 ProSiteProfiles Trp-Asp (WD) repeats profile. 289 330 IPR001680 GO:0005515
Bma04g00142 814 Gene3D - 160 431 IPR015943 GO:0005515
Bma04g00142 814 Gene3D - 6 151 IPR015943 GO:0005515
Bma04g00142 814 MobiDBLite consensus disorder prediction 130 145 - -
Bma04g00142 814 MobiDBLite consensus disorder prediction 130 161 - -
Bma04g00142 814 Pfam WD domain, G-beta repeat 205 230 IPR001680 GO:0005515
Bma04g00142 814 Pfam WD domain, G-beta repeat 292 320 IPR001680 GO:0005515
Bma04g00142 814 SMART WD40_4 3 42 IPR001680 GO:0005515
Bma04g00142 814 SMART WD40_4 49 95 IPR001680 GO:0005515
Bma04g00142 814 SMART WD40_4 233 279 IPR001680 GO:0005515
Bma04g00142 814 SMART WD40_4 534 569 IPR001680 GO:0005515
Bma04g00142 814 SMART WD40_4 282 321 IPR001680 GO:0005515
Bma04g00142 814 SMART WD40_4 370 412 IPR001680 GO:0005515
Bma04g00142 814 SMART WD40_4 98 185 IPR001680 GO:0005515
Bma04g00142 814 SMART WD40_4 191 230 IPR001680 GO:0005515
Bma04g00142 814 SUPERFAMILY WD40 repeat-like 252 673 IPR036322 GO:0005515
Bma04g00142 814 SUPERFAMILY WD40 repeat-like 13 326 IPR036322 GO:0005515
Bma04g00142 814 PANTHER WD REPEAT-CONTAINING PROTEIN PCN 1 814 IPR044622 GO:0010073|GO:0035266
Bma04g00142 814 ProSiteProfiles Trp-Asp (WD) repeats profile. 198 239 IPR001680 GO:0005515
Bma04g00142 814 Gene3D - 464 722 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00142 K14548 UTP4, CIRH1A; U3 small nucleolar RNA-associated protein 4 - jre:109001109 1155.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02244 Bma04g00142 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00142 Bma-Chr4:1203001 Bma14g00649 Bma-Chr14:6981744 5.50E-07 dispersed
Bma01g02244 Bma-Chr1:79584736 Bma04g00142 Bma-Chr4:1203001 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g629 Blo01g01492 Blo12g00991 Bda01g00594 Bda03g00168 Bpe02g00456 Bpe04g00153 Bma04g00142 Bma01g02244 . . Cma01g01778 Cma09g00298 Car01g01386 . . Cpe06g00208 . . . . . . . . . . . . . . . Cone4ag1622 Cone7ag1326 . . Lsi04g01475 Csa04g02488 . . . . . . . . . . Sed01g2728 Cmo01g01836 Cmo09g00290 . . . Car09g00251 . Cpe02g00228 Bhi09g03217 Tan01g4681 Cmetu07g0687 . Hepe01g1838 Mch11g0372 . Cla05g02114 Cam05g2266 Cec05g2287 Cco05g2329 Clacu05g2263 Cmu05g2126 Cre05g2249 . . Chy07g00197 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005030 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00142 Bma_Chr04 FPKM 5.016591 5.04555 30.316042 28.485655 5.133105 4.309368 4.361514 26.45215 28.241127 28.584627