Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00146 ATGGATTCTACGGCGATTCTCGCATGGTTCTTGGACCGAGCTCAGTCGAGGCTGATGAAGGCAAGCTCCGTTTTCGTAGAACAAGTGGAAATTAGAGACGATAACTGCAAAGGAATGCAGCTTTATTCATTCTCTGAGAAGCCTGAATTGACTTTGGAAACGAATTGGAGCGTTTCGAATTACTTGATCGTTGCATCATACGGCAGAAAGGGTTTTTCCCTGTGGCTAAACAGGGGTTCGAAGATAAGTATGAGATGGGAAACTCATAAGAGCGCTTTGAACCAGCTTCAAGTTCTGATGATCAAAGGAGATCGAAAACACGAAACGTTATTACCAACCTTCACTGGTTCTCCTTCCGCTGAAGCACTGGAAGGCAGGGAAGCAGAATTCGTGATCGAGGAGGATGATAAATACTTTTTAGGGTTCGTCAACGGCAACGGGAAAAGCATAATCATGACACTATACCTAAATGTTTCATCAAAGAGTTACGACATTTCTCGTGCCAATAGTATCTGCTCTGCGATGAATGGCTCTTGCAAGCTCAACCTGCAATTTCCTTCAACTCAGTACGTCGTACTAACAACTCCCGACGACGGGAGTATTGGAGGATGGTATGTCGAGCTTTCTTTTGTTGCTCGAGTTGTGACTTACATCGCAATTCTTGGATTAATCATGATTGTCGTGTTTTTAATATTGAAGTATCTCGGAACATGCGATAACCGTAGTACTGCTTTCATGGAAACAACTCCACCCGAAATAAGAGTATCAGAGACAACACCTATATTGCCGGAAAAGCCGACCTGTCATACATACGGAACGGGTGATGACGACGAAGAATCTGGTGCGTCGAGTAGTTCATCGGAGGAGTTATATGATGACAAACTGTGCGTGATTTGCTACGACGAGCAGCGAAATTGCTTCTTCGTTCCCTGCGGTCACTGTGCAACATGTTACGATTGTGCGCAGAGGATCATGGAGGGGGAGAGCAAGGTTTGCCCGATATGCAGAAGACTAATTCACAGAGTTAGAAAATTGTTCAACTCGTAG 1047 44.6 MDSTAILAWFLDRAQSRLMKASSVFVEQVEIRDDNCKGMQLYSFSEKPELTLETNWSVSNYLIVASYGRKGFSLWLNRGSKISMRWETHKSALNQLQVLMIKGDRKHETLLPTFTGSPSAEALEGREAEFVIEEDDKYFLGFVNGNGKSIIMTLYLNVSSKSYDISRANSICSAMNGSCKLNLQFPSTQYVVLTTPDDGSIGGWYVELSFVARVVTYIAILGLIMIVVFLILKYLGTCDNRSTAFMETTPPEIRVSETTPILPEKPTCHTYGTGDDDEESGASSSSSEELYDDKLCVICYDEQRNCFFVPCGHCATCYDCAQRIMEGESKVCPICRRLIHRVRKLFNS 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1280633 1282375 - Bma018591.1 Bma04g00146 80515

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00146 348 MobiDBLite consensus disorder prediction 262 286 - -
Bma04g00146 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 347 IPR013083 -
Bma04g00146 348 SUPERFAMILY RING/U-box 287 342 - -
Bma04g00146 348 Pfam Domain of unknown function (DUF4792) 39 105 IPR032008 -
Bma04g00146 348 Pfam Domain of unknown function (DUF4793) 129 230 IPR032010 -
Bma04g00146 348 ProSiteProfiles Zinc finger RING-type profile. 296 336 IPR001841 -
Bma04g00146 348 SMART ring_2 296 335 IPR001841 -
Bma04g00146 348 Pfam Zinc finger, C3HC4 type (RING finger) 293 342 - -
Bma04g00146 348 PANTHER OS05G0521000 PROTEIN 13 347 IPR044586 GO:0004842
Bma04g00146 348 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 13 347 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00146 - - - rcu:8288527 457.988
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00146 Bma-Chr4:1280633 Bma06g00368 Bma-Chr6:9212302 1.82E-33 dispersed
Bma04g00146 Bma-Chr4:1280633 Bma07g00066 Bma-Chr7:1489628 4.20E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g688 . Blo12g00977 . Bda03g00193 . . Bma04g00146 . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1603 Cone7ag1347 . Cone20ag0218 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015386 2 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 2 12
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00146 Bma_Chr04 FPKM 1.454545 1.188048 0.480898 0.46312 0.614021 0.88859 0.521115 0.0 0.0 0.0