Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00147 TTCCGCATGTCTGAAATCTGTGTTCGTCTCATTCGCGGTGCAAAGAAGAGAGAGGCAGCGGCGGGAATGGCGGAAGAACCATTGATTAAGAAGGAACGGGTCATGGAACCGAAAAGAAGGCCACTCCACAATTATCTTGAGAAAATTCAGAAGGATGTGACTGCTAATATGCGAGGGGTGTTGGTCGATTGGTTGGTAGAGGTCGCCGCGGAGTACAAACTCAGTTCAGATACTCTTTACCTCTCCATCTCCTATATCGATAGGTTCTTGTCTCTGCACACTCTTAATCGACAAAGGCTTCAACTCCTTGGCGTTTCTGCCGTGCTCATTGCTTCTAAGTACGAAGAGATTAGCCCTCCACATGTAGAAGAGTTGTGCTATATCACGGACAATACTTATACAAAGGACGAAGTGGTGAAGATGGAGGCTGATTTACTCAAATCTTTGAATTTCGAAACTGGCAATCCTACAACTAAGACATTCTTGAGACGGTTTATTAGTATTTCCCAAGAGCGAAATAATGATCCCAATTCGCAGCTAGAGTTTCTGAGTTACTATCTTGCAGAATTAAGTTTACTGGACTACAATTTCTTAAAGTTCTTGCCCTCTTTGGTTGCTGCTGCTGTTGTTTTCATTGCAAAGTTCATACTTGAACCAAAGAATCACCCATGGCCTCAATTGTTGGAACAATATTCTGGGTATAAATCGAATGAGTTGGAAGACTGTGTTCTGATGCTGCTTGACCTGTATCTGGGCAGAAGAGGAGGGTCTCTCTTAGCCATAAGAGAGAAATACAAGCAGCAGAAGTTCAATCGTGTGTCGTCTCTGCCTTCGCCTCCGGAAATACCCGCTTTATATTTTGAGGATGTACGAGGGTCGTTGTCGATGCGATAA 894 43.85 FRMSEICVRLIRGAKKREAAAGMAEEPLIKKERVMEPKRRPLHNYLEKIQKDVTANMRGVLVDWLVEVAAEYKLSSDTLYLSISYIDRFLSLHTLNRQRLQLLGVSAVLIASKYEEISPPHVEELCYITDNTYTKDEVVKMEADLLKSLNFETGNPTTKTFLRRFISISQERNNDPNSQLEFLSYYLAELSLLDYNFLKFLPSLVAAAVVFIAKFILEPKNHPWPQLLEQYSGYKSNELEDCVLMLLDLYLGRRGGSLLAIREKYKQQKFNRVSSLPSPPEIPALYFEDVRGSLSMR 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1283818 1285824 + Bma018592.2 Bma04g00147 80516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00147 297 SMART Cyclin_C_2 156 279 IPR004367 -
Bma04g00147 297 PANTHER CYCLINS 35 290 IPR039361 -
Bma04g00147 297 Pfam Cyclin, C-terminal domain 156 279 IPR004367 -
Bma04g00147 297 PANTHER CYCLIN-A3-1-RELATED 35 290 - -
Bma04g00147 297 SUPERFAMILY Cyclin-like 156 281 IPR036915 -
Bma04g00147 297 SUPERFAMILY Cyclin-like 28 152 IPR036915 -
Bma04g00147 297 CDD CYCLIN 57 146 IPR013763 -
Bma04g00147 297 PIRSF Cyclin_A_B_D_E 28 285 IPR039361 -
Bma04g00147 297 CDD CYCLIN 156 247 IPR013763 -
Bma04g00147 297 Gene3D - 41 154 - -
Bma04g00147 297 Pfam Cyclin, N-terminal domain 36 152 IPR006671 -
Bma04g00147 297 ProSitePatterns Cyclins signature. 58 89 IPR006671 -
Bma04g00147 297 SMART cyclin_7 63 147 IPR013763 -
Bma04g00147 297 SMART cyclin_7 160 248 IPR013763 -
Bma04g00147 297 Gene3D - 33 275 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g00147 Bma05g00047 CCT
Bma04g00147 Bma05g00047 ECH
Bma01g02257 Bma04g00147 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00209 Bma-Chr2:2255994 Bma04g00147 Bma-Chr4:1283818 1.92E-82 dispersed
Bma02g00210 Bma-Chr2:2260698 Bma04g00147 Bma-Chr4:1283818 1.22E-78 dispersed
Bma04g00147 Bma-Chr4:1283818 Bma01g00703 Bma-Chr1:6423557 9.21E-55 dispersed
Bma05g00047 Bma-Chr5:2323966 Bma04g00147 Bma-Chr4:1283818 8.48E-40 dispersed
Bma01g02257 Bma-Chr1:79747472 Bma04g00147 Bma-Chr4:1283818 9.48E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00147 K06627 - zju:107420528 394.045