Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00157 ATGGAAGGAGAGTTCTGTTCTGGAGCTTCTTCTTCGTCGTCTTCGACCTCTAGCACAGACCAGAAGATGAAGCAGAGGCAACTCCGGCGGGAAGAAAAGCCCTACAGAGGTATACGGATGAGGAAGTGGGGAAAGTGGGTGGCAGAGATTAGAGAGCCCAATAAAAGGTCGAGGATTTGGTTGGGTTCTTACTCTACCCCTGTCGCCGCTGCTCGTGCGTACGACACCGCCGTCTTTTATCTCCGGGGAACATCCGCTCGCTTGAATTTTCCGGAGCTCATGATTGGAGAAGAGCAGCGGGGAGATTTGTCTGCCGCTTCTATACGCAAAATCGCCACTGAAGTTGGGGCTAAAGTTGACGCCGTCCAAACAGCTCTTCATTTGTCGATGTCTGTTTCTACTCAGCCGCCGGAGAAGCCGGACTTGAACCAGTTTCCATGCCCCGAAAGTTCAGACGAAGACTGA 465 52.47 MEGEFCSGASSSSSSTSSTDQKMKQRQLRREEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGTSARLNFPELMIGEEQRGDLSAASIRKIATEVGAKVDAVQTALHLSMSVSTQPPEKPDLNQFPCPESSDED 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1351665 1352129 + Bma018602.2 Bma04g00157 80526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00157 154 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700|GO:0006355
Bma04g00157 154 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Bma04g00157 154 MobiDBLite consensus disorder prediction 131 154 - -
Bma04g00157 154 Pfam AP2 domain 35 83 IPR001471 GO:0003700|GO:0006355
Bma04g00157 154 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 152 - -
Bma04g00157 154 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Bma04g00157 154 MobiDBLite consensus disorder prediction 1 22 - -
Bma04g00157 154 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 152 - -
Bma04g00157 154 CDD AP2 35 93 IPR001471 GO:0003700|GO:0006355
Bma04g00157 154 MobiDBLite consensus disorder prediction 1 34 - -
Bma04g00157 154 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Bma04g00157 154 PRINTS Ethylene responsive element binding protein signature 73 93 IPR001471 GO:0003700|GO:0006355
Bma04g00157 154 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02644 Bma-Chr1:83946639 Bma04g00157 Bma-Chr4:1351665 5.32E-27 dispersed
Bma02g00222 Bma-Chr2:2360587 Bma04g00157 Bma-Chr4:1351665 2.27E-25 dispersed
Bma04g00157 Bma-Chr4:1351665 Bma09g00267 Bma-Chr9:14634594 2.05E-49 dispersed
Bma06g00651 Bma-Chr6:34931400 Bma04g00157 Bma-Chr4:1351665 1.61E-48 transposed
Bma01g02267 Bma-Chr1:79830359 Bma04g00157 Bma-Chr4:1351665 4.08E-82 wgd
Bma01g00656 Bma-Chr1:5967683 Bma04g00157 Bma-Chr4:1351665 6.64E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57113 PF00847 AP2 1.60E-11 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00157 K09286 - pvy:116125671 209.534