Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00160 AGCGAGCAGCTGAAGTCGGAGGATCAGATGGAGATAATGATGATGATGATGCATCAAACGGACAAAAACCAAGCATTTTGCGGCGCCTACAATGACATCACTGAATTTTCACCGTCTGATTATGCTGGTTCGAGCGGCTGTAATAACACCACTGCCATCCCACATTGTTCAGACAGCCTCCAACAGTCGTCTCATTCCTTCATAAATTTTCCTATTTCTTCTTCTTTGGCGAACAATGGTTCTTCATTATCGGCAGAGACGCAGGCGCCATTTTTATCCAGGTGGGGAGGTGAATTATCCAGCGGTGAAAATGGCTTCTTCTCTTCACCTGATTCTGAAAGACCTAATTCAATGGCCACAATGAGGGAGATGATTTTCCGAATTGCAGCGATGCAGCCAATTCATATAGACCCAGAATCGGTGAAGCCGCCGAAACGGAGGAACGTGAAGATATCGAAAGACCCACAAAGCGTAGCGGCTAGGCACCGGAGAGAGAAGATAAGTGAGAGAATCAGAATTCTTCAGAGGCTAGTACCAGGTGGGACGAAAATGGATACAGCTTCCATGTTGGACGAAGCTATTCATTACGTTAAATTCTTGAAGGGCCAAGTGCAGTCCTTGGAGAGAGCTGCAGCTAACAGGCCGGCTGGTTTAGAGTATCCCATTGCAGTCTCCAATGTCGGAAGCTATTTTCCTGTGGCAAAGGATTGCCAATTGCCTCGTCGAATTTAG 732 46.72 SEQLKSEDQMEIMMMMMHQTDKNQAFCGAYNDITEFSPSDYAGSSGCNNTTAIPHCSDSLQQSSHSFINFPISSSLANNGSSLSAETQAPFLSRWGGELSSGENGFFSSPDSERPNSMATMREMIFRIAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRREKISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKGQVQSLERAAANRPAGLEYPIAVSNVGSYFPVAKDCQLPRRI 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1391143 1391874 + Bma018606.1 Bma04g00160 80529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00160 243 CDD bHLH_AtIND_like 152 208 - -
Bma04g00160 243 SMART finulus 157 206 IPR011598 GO:0046983
Bma04g00160 243 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 2 238 - -
Bma04g00160 243 Gene3D - 150 218 IPR036638 GO:0046983
Bma04g00160 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 200 IPR011598 GO:0046983
Bma04g00160 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 210 IPR036638 GO:0046983
Bma04g00160 243 Pfam Helix-loop-helix DNA-binding domain 160 200 IPR011598 GO:0046983
Bma04g00160 243 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 2 238 IPR045843 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g00160 Bma05g00038 CCT
Bma04g00160 Bma05g00038 ECH
Bma01g02271 Bma04g00160 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00160 Bma-Chr4:1391143 Bma05g00038 Bma-Chr5:2140989 1.18E-59 dispersed
Bma11g00948 Bma-Chr11:42389344 Bma04g00160 Bma-Chr4:1391143 4.29E-08 dispersed
Bma14g01112 Bma-Chr14:14007691 Bma04g00160 Bma-Chr4:1391143 7.65E-16 dispersed
Bma09g00395 Bma-Chr9:33200662 Bma04g00160 Bma-Chr4:1391143 1.15E-43 transposed
Bma01g02271 Bma-Chr1:79860933 Bma04g00160 Bma-Chr4:1391143 2.86E-134 wgd
Bma04g00160 Bma-Chr4:1391143 Bma05g00057 Bma-Chr5:2394198 1.79E-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57114 PF00010 HLH 1.60E-06 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00160 - - tcc:18591179 256.914